Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H08
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    28   1.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   4.7  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   8.2  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +2

Query: 362  LIS*RAIHIIDFVLFQESEKNNRGHVIYIQPSVHPSYAGIYSPLNRMLYTVREAIQLSV 538
            L++ +AI    F ++++S     G + Y +P +H     +Y+ LNR+L   +E + LSV
Sbjct: 1279 LLTWKAITTTKFSIYEDSN----GEMAYYRPLLHV----LYNTLNRLLSEEKENLSLSV 1329


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 302 ERKLFQSVIL*IFF*KLIADLIS*RAIHIIDFVLFQESEKNNRG 433
           +R LF+   + +F   L    I   A  + DF+ FQ+ E+N RG
Sbjct: 189 DRSLFKFYPIDLFVLLLSQSFICIIAFGVSDFINFQKEERNFRG 232


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 697 GPTSWSLIFSSFPARYXSELVTLNRKTLV*SWTSGFLHISKISP 566
           GP  W ++  +FP RY S+  ++       +W   F+ IS  +P
Sbjct: 384 GPMGWVIVGETFPIRYRSKCASVATSG---NWLGNFM-ISFFTP 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,022
Number of Sequences: 5004
Number of extensions: 48046
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)