Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H08
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0001 + 13984436-13984514,13984804-13984926,13985181-139854...    33   0.23 
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725...    29   3.7  
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963...    29   3.7  

>10_08_0001 +
           13984436-13984514,13984804-13984926,13985181-13985468,
           13985560-13985690,13985764-13985979,13986059-13986442
          Length = 406

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 444 TFNRLFILLMLGFIALSI-GCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTRV 620
           TF R  I++   F  + I GCF ++ +P    F Q++  +D G    MWR     +YT  
Sbjct: 257 TFPRWTIVMANLFAVIQITGCFQIYCRPTFAQFEQRIQAKDAGYRARMWR----LVYTSA 312

Query: 621 FLFNVT 638
           ++  +T
Sbjct: 313 YMVVIT 318


>03_06_0709 -
           35670153-35670350,35671206-35671259,35672444-35672527,
           35672688-35672902,35673959-35674058,35674178-35674276
          Length = 249

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 483 IALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTR 617
           +  ++GC +  + PY+   N K+++Q     +E+WR     LY R
Sbjct: 24  VVTTVGCTLEIISPYHLYLNPKLVVQH----YEIWRLVTNFLYFR 64


>03_02_0865 -
           11895257-11895340,11896004-11896069,11896297-11896355,
           11896470-11896557,11897158-11897328,11897406-11897564,
           11897653-11897835,11897931-11898012,11898753-11898959,
           11899099-11899170,11901948-11902055,11902460-11902506
          Length = 441

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 641 ISHVEQKDPRIKLDFRFPPHLE 576
           IS  E   PR+ +D+ FPPHLE
Sbjct: 124 ISSAEPIAPRLGVDYPFPPHLE 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,006
Number of Sequences: 37544
Number of extensions: 295998
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)