Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H08
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   5e-05
SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)                  42   7e-04
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)                    29   6.6  
SB_8748| Best HMM Match : Astacin (HMM E-Value=0)                      28   8.8  

>SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 19/58 (32%), Positives = 34/58 (58%)
 Frame = +3

Query: 540 NQKVLLQDGGEIFEMWRKPEVQLYTRVFLFNVTNSEXYLAGKDEKIKLQEVGPYVYRE 713
           +Q+++L+ G   F+ W++P + +Y + F+FNV N     A     + + + GPY YRE
Sbjct: 47  DQQLVLKPGSSSFKQWKEPPIPIYLQFFIFNVVNEME--AKNGSPLVVAQQGPYSYRE 102


>SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)
          Length = 314

 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +3

Query: 576 FEMWRKPEVQLYTRVFLFNVTNSEXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGT 755
           ++ W  P V ++  +++F+V N +   +G    I+  E+GPY YRE L  +  +FN + T
Sbjct: 52  YKQWIFPTVPIHIELYVFHVVNPDEVRSGATPVIR--ELGPYTYREYLLKENITFNQDET 109

Query: 756 L 758
           L
Sbjct: 110 L 110


>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
          Length = 1433

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 549 VLLQDGGEIFEMWRKPEVQLYTRV---FLFNVTNSEXYLAGKDEKIKLQEVGPYVYREA 716
           V L +G  +  +W+KPE + +T +    L     ++ ++ GK +   + + G Y  REA
Sbjct: 192 VQLGEGNHVSVLWKKPEEKNFTSISTKHLLPFFTNDEHMNGKFDWRTVSKPGKYSRREA 250


>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 757

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 609 YTRVFLFNVTNSEXYLAGKDEKIKLQEVG-PYVYREALEHKVXSFNSNGTLSXIP 770
           Y  +   N+ + + +   K E  K+  +G PY Y   + + + +F+SNG  + +P
Sbjct: 171 YITIHWDNIQSDKQFNFQKYEHGKVDTLGAPYDYGSIMHYPMFAFSSNGRATIVP 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,495,448
Number of Sequences: 59808
Number of extensions: 362038
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)