Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_H08
(888 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D12676-1|BAA02177.1| 478|Homo sapiens 85kDa lysosomal sialoglyc... 73 1e-12
BT006939-1|AAP35585.1| 478|Homo sapiens scavenger receptor clas... 73 1e-12
BC021892-1|AAH21892.1| 478|Homo sapiens scavenger receptor clas... 73 1e-12
Z22555-1|CAA80277.1| 509|Homo sapiens CLA-1 protein. 54 9e-07
BC112037-1|AAI12038.1| 509|Homo sapiens scavenger receptor clas... 52 2e-06
BC093732-1|AAH93732.1| 509|Homo sapiens scavenger receptor clas... 52 2e-06
BC080647-1|AAH80647.1| 509|Homo sapiens scavenger receptor clas... 52 2e-06
AB209436-1|BAD92673.1| 581|Homo sapiens Scavenger receptor clas... 52 2e-06
AF515445-1|AAQ08185.1| 474|Homo sapiens scavenger receptor clas... 49 2e-05
BC126368-1|AAI26369.1| 802|Homo sapiens fer-1-like 5 (C. elegan... 32 3.2
BC117324-1|AAI17325.1| 801|Homo sapiens fer-1-like 5 (C. elegan... 32 3.2
>D12676-1|BAA02177.1| 478|Homo sapiens 85kDa lysosomal
sialoglycoprotein protein.
Length = 478
Score = 73.3 bits (172), Expect = 1e-12
Identities = 38/105 (36%), Positives = 59/105 (56%)
Frame = +3
Query: 441 FTFNRLFILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTRV 620
+T L +LL++ + L + +F K + +K++L++G E F+ W KP + +YT+
Sbjct: 7 YTAGTLSLLLLVTSVTLLVAR--VFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQF 64
Query: 621 FLFNVTNSEXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGT 755
+ FNVTN E L G E +++EVGPY YRE F NGT
Sbjct: 65 YFFNVTNPEEILRG--ETPRVEEVGPYTYRELRNKANIQFGDNGT 107
>BT006939-1|AAP35585.1| 478|Homo sapiens scavenger receptor class
B, member 2 protein.
Length = 478
Score = 73.3 bits (172), Expect = 1e-12
Identities = 38/105 (36%), Positives = 59/105 (56%)
Frame = +3
Query: 441 FTFNRLFILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTRV 620
+T L +LL++ + L + +F K + +K++L++G E F+ W KP + +YT+
Sbjct: 7 YTAGTLSLLLLVTSVTLLVAR--VFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQF 64
Query: 621 FLFNVTNSEXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGT 755
+ FNVTN E L G E +++EVGPY YRE F NGT
Sbjct: 65 YFFNVTNPEEILRG--ETPRVEEVGPYTYRELRNKANIQFGDNGT 107
>BC021892-1|AAH21892.1| 478|Homo sapiens scavenger receptor class
B, member 2 protein.
Length = 478
Score = 73.3 bits (172), Expect = 1e-12
Identities = 38/105 (36%), Positives = 59/105 (56%)
Frame = +3
Query: 441 FTFNRLFILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTRV 620
+T L +LL++ + L + +F K + +K++L++G E F+ W KP + +YT+
Sbjct: 7 YTAGTLSLLLLVTSVTLLVAR--VFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQF 64
Query: 621 FLFNVTNSEXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGT 755
+ FNVTN E L G E +++EVGPY YRE F NGT
Sbjct: 65 YFFNVTNPEEILRG--ETPRVEEVGPYTYRELRNKANIQFGDNGT 107
>Z22555-1|CAA80277.1| 509|Homo sapiens CLA-1 protein.
Length = 509
Score = 53.6 bits (123), Expect = 9e-07
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Frame = +3
Query: 477 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 644
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 18 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 75
Query: 645 EXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGTLSXI 767
L G EK +++E GPYVYRE+ +FN+N T+S +
Sbjct: 76 SEILKG--EKPQVRERGPYVYRESRHKSNITFNNNDTVSFL 114
>BC112037-1|AAI12038.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 52.4 bits (120), Expect = 2e-06
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = +3
Query: 477 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 644
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 18 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 75
Query: 645 EXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGTLSXI 767
L G EK +++E GPYVYRE +FN+N T+S +
Sbjct: 76 SEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDTVSFL 114
>BC093732-1|AAH93732.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 52.4 bits (120), Expect = 2e-06
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = +3
Query: 477 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 644
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 18 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 75
Query: 645 EXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGTLSXI 767
L G EK +++E GPYVYRE +FN+N T+S +
Sbjct: 76 SEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDTVSFL 114
>BC080647-1|AAH80647.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 52.4 bits (120), Expect = 2e-06
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = +3
Query: 477 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 644
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 18 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 75
Query: 645 EXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGTLSXI 767
L G EK +++E GPYVYRE +FN+N T+S +
Sbjct: 76 SEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDTVSFL 114
>AB209436-1|BAD92673.1| 581|Homo sapiens Scavenger receptor class B
member 1 variant protein.
Length = 581
Score = 52.4 bits (120), Expect = 2e-06
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = +3
Query: 477 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 644
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 46 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 103
Query: 645 EXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGTLSXI 767
L G EK +++E GPYVYRE +FN+N T+S +
Sbjct: 104 SEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDTVSFL 142
>AF515445-1|AAQ08185.1| 474|Homo sapiens scavenger receptor class B
type III protein.
Length = 474
Score = 49.2 bits (112), Expect = 2e-05
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +3
Query: 576 FEMWRKPEVQLYTRVFLFNVTNSEXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGT 755
F MW++ + Y V+ +V N L G EK +++E GPYVYRE +FN+N T
Sbjct: 18 FNMWKEIPIPFYLSVYFLDVMNPSEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDT 75
Query: 756 LSXI 767
+S +
Sbjct: 76 VSFL 79
>BC126368-1|AAI26369.1| 802|Homo sapiens fer-1-like 5 (C. elegans)
protein.
Length = 802
Score = 31.9 bits (69), Expect = 3.2
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = +3
Query: 417 RRITEDMLFTFNRLFILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKP 596
R ++ + F + + ++ F+ +SI +LF NF+++ L W KP
Sbjct: 689 RSPVQNFCYIFWKRYRFKLIAFMVISIIALMLF----NFIYSAPHYLAMS------WIKP 738
Query: 597 EVQLYTRVFLFNVTNS 644
++QLY + +FN+ NS
Sbjct: 739 QLQLYPPIKIFNIINS 754
>BC117324-1|AAI17325.1| 801|Homo sapiens fer-1-like 5 (C. elegans)
protein.
Length = 801
Score = 31.9 bits (69), Expect = 3.2
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = +3
Query: 417 RRITEDMLFTFNRLFILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKP 596
R ++ + F + + ++ F+ +SI +LF NF+++ L W KP
Sbjct: 688 RSPVQNFCYIFWKRYRFKLIAFMVISIIALMLF----NFIYSAPHYLAMS------WIKP 737
Query: 597 EVQLYTRVFLFNVTNS 644
++QLY + +FN+ NS
Sbjct: 738 QLQLYPPIKIFNIINS 753
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,130,305
Number of Sequences: 237096
Number of extensions: 1631561
Number of successful extensions: 2554
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2551
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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