Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H08
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-17|CAB11566.3|  534|Caenorhabditis elegans Hypothetical p...    47   2e-05
Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical pr...    36   0.029
AF106592-5|AAK21368.1|  525|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>Z98866-17|CAB11566.3|  534|Caenorhabditis elegans Hypothetical
           protein Y49E10.20 protein.
          Length = 534

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
 Frame = +3

Query: 468 LMLGFIALSIGCFILFVKPYNFLFNQKVLLQD---------GGEI----FEMWRKPEVQL 608
           ++LG +  + G  +L   P + + N++V+ QD         G E+     + W KP   +
Sbjct: 13  IILGLLLAAAGVLLLIGIPIDRIVNRQVIDQDFLGYTRDENGTEVPNAMTKSWLKPLYAM 72

Query: 609 YTRVFLFNVTNSEXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSNGT 755
              +++FNVTN +  L  + EK  L E+GP+V+ E  E     F  N T
Sbjct: 73  QLNIWMFNVTNVDGILK-RHEKPNLHEIGPFVFDEVQEKVYHRFADNDT 120


>Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical
           protein F11C1.3 protein.
          Length = 560

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
 Frame = +3

Query: 453 RLFILLMLGFIAL---SIGCFILFVKP---YNFLFNQKVLLQD--GGEIFE---MWRK-P 596
           RLF+ ++L  + L   ++G F+L   P   +  + + +V LQ    G++      W K P
Sbjct: 2   RLFVAIILAAVILLVFALGIFLLIPFPIAIFQSIVDSQVYLQQKSDGQLPTGTFYWSKIP 61

Query: 597 EVQLYTRVFLFNVTNSEXYLAGKDEKIKLQEVGPYVYREALEHKVXSFNSN 749
            VQ++T   LFNVTN +  L        + E+GPY Y E        F  N
Sbjct: 62  AVQIWT-FHLFNVTNPDEVLY-YGATPNMLEIGPYTYTETEFKDFTQFRDN 110


>AF106592-5|AAK21368.1|  525|Caenorhabditis elegans Hypothetical
           protein D1037.5 protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 599 FRFPPHLEDFAPILQKDFLIKQKVVWLHEQYKASY 495
           FRF PHL     + + D     +V+W  EQY AS+
Sbjct: 435 FRFSPHLSQGISLDEIDLEKVMQVMWETEQYVASH 469


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 670 RKLSSRKSGLTCTERLWNTKFXASTRTVRCRXFP 771
           RKL  +K  +  TE LW T   +ST     R  P
Sbjct: 719 RKLGGKKDQVRPTEELWATPILSSTSNTETRQLP 752


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,780
Number of Sequences: 27780
Number of extensions: 274904
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)