Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H07
         (871 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.5  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 294 DESRNSIDENKEKDHDNASSASTVEVL 374
           D +RN +  +K K H +  +AS + VL
Sbjct: 223 DTARNFLTVSKIKKHIDGMAASKLNVL 249


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 14/64 (21%), Positives = 25/64 (39%)
 Frame = +3

Query: 177 KCKSVKITQSXPVAEXXXNERXXTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSA 356
           +C+S+K     P  +   +      KT   D+  S   QD    ++ + +EK      +A
Sbjct: 81  QCRSIKNECPEPTCDEPVHRPGRCCKTCPGDLYDSDIIQDIVPQNVLDEEEKSSTKHYAA 140

Query: 357 STVE 368
              E
Sbjct: 141 LLTE 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,384
Number of Sequences: 336
Number of extensions: 2884
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)