Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H07
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   1.1  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    29   1.1  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   3.5  
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    27   3.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   4.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   4.6  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   8.0  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 252 KTDVSDVNSSKDAQDESRNSIDENKEKDHDNAS 350
           + ++  + SS++   +SR S+DENK     N S
Sbjct: 367 RRNLKSLRSSRNLHQQSRKSLDENKPNSFSNVS 399


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 231 NERXXTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 383
           N       + V+ +NSS         S+ + +  DHDN S A TV + +D+
Sbjct: 75  NSEIIEKNSPVNKLNSSTSLTTHQLASLPKLEVTDHDNVSEAETVVLNEDE 125


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 264 SDVNSSKDAQDESRNSIDENKEKDHDNASSAST 362
           S+ + S  + DES +S  E++    DN SS+S+
Sbjct: 100 SEASGSGSSSDESDSSSSESESSSEDNDSSSSS 132


>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 249 LKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 383
           LK  + +V+ S    D   +S DE KEK  +NAS  +  + L+ K
Sbjct: 80  LKQLIHEVDDSLGLVDSGSDSEDEIKEKAENNASLKNDEDDLNTK 124


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 252 KTDVSDVNSSKDAQD-ESRNSIDENKEKDHDNAS 350
           KTDV   + SK +++ ESRN+ DEN  K   N S
Sbjct: 120 KTDVHKESVSKLSKNLESRNNRDENSAKREKNNS 153


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +2

Query: 392 FKNVDVXQKIYSAILKTQRL----F*LIFLHTFSNAIYFVSANLLFSKQNIFRFSKVTIN 559
           F+ +DV ++  +  L    L    +  I LH +    Y +SA  +F  +    F+    N
Sbjct: 685 FEKIDVAERTCTISLNAPILPDDGYAYIRLHVYFPNNYPISATPVFQLERSSAFNDEQFN 744

Query: 560 LLCIMISAYQFECII*CRYCDLAC 631
            +   +++   +CI   +YC  AC
Sbjct: 745 YVFNTLTSISDQCISSHKYCMDAC 768


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 285 DAQDESRNSIDENKEKDHDNASSASTVEVLDDK*SVLKMWMCXKK 419
           DA+   +NS D +++          T+  ++D+ ++ KMW+   K
Sbjct: 450 DARSMLKNSFDGSRDLQKSLIEHVRTLRRIEDEITLTKMWISIAK 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,810
Number of Sequences: 5004
Number of extensions: 42766
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)