Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H07
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1315 + 29270679-29270908,29270992-29271394,29271633-292717...    30   2.8  
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980     29   4.8  
01_06_0925 - 33067106-33067280,33069193-33069517,33070757-330707...    29   6.4  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    29   6.4  
05_07_0034 - 27200513-27200605,27200750-27200802,27201724-272017...    28   8.5  

>06_03_1315 +
           29270679-29270908,29270992-29271394,29271633-29271796,
           29271943-29272013,29272360-29272559
          Length = 355

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 685 RGYQLIWHSVVVK*HTFTACKVTISALNNTFKLICTNH 572
           RGY  + H   V    FTAC + ++A+  TF L  T H
Sbjct: 25  RGYLPLRHPPHVAPGRFTACLLAVAAVTTTFALALTLH 62


>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
          Length = 681

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 252 KTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVE 368
           K+D  +  SSK+   E+ +S DE ++K   + +S+S+ E
Sbjct: 165 KSDEEESESSKEESSEASSSSDEEEDKRESSEASSSSDE 203


>01_06_0925 -
           33067106-33067280,33069193-33069517,33070757-33070795,
           33071188-33071395
          Length = 248

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 590 FECII*CRYCDLACSKCVLFYNN 658
           F C I CR+ D  C  CV FY+N
Sbjct: 224 FGCEI-CRFTDCGCQTCVDFYHN 245


>01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,
            1387228-1387571,1387641-1387905,1387998-1388075,
            1388207-1388260,1389341-1389361,1389453-1389578,
            1389696-1389863,1389923-1390313,1390629-1390710,
            1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 219  EXXXNERXXTLKTDVSDVNSSKDAQD--ESRNSIDENKEKDHDNA 347
            E   N R       + +VN + D Q   ES   ++  +EKDH NA
Sbjct: 1173 ERQGNPRRCAFTLWIDNVNPTYDGQKITESETQVEYQREKDHQNA 1217


>05_07_0034 -
           27200513-27200605,27200750-27200802,27201724-27201797,
           27202762-27202830,27203070-27204148
          Length = 455

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 611 RYCDLACSKCVLFYNNRVPYQ--LITSCKLVIVINNMSLLIATIVXCXI 751
           +YCD+    CVLF    V +   L+ +  L++  +  + +IA +  C +
Sbjct: 354 QYCDMVGRICVLFLGEVVIHHIALLLTAALILQSSTFACIIAAVYECQV 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,909,281
Number of Sequences: 37544
Number of extensions: 220622
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)