Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_H07
(871 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 32 0.70
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9) 31 0.93
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4) 31 0.93
SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7) 30 2.8
SB_54255| Best HMM Match : DUF329 (HMM E-Value=7.8) 30 2.8
SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091) 29 4.9
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062) 28 8.6
SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26) 28 8.6
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 471 CKKIN*NNLWVFKIAE*IFXNTSTFLKHFTYHQELQQ*RRCSHCRDLFLCSRLYYFEIHP 292
C K + ++ + F S++ HF YH + +CSHC + F +R E H
Sbjct: 904 CPKKKPQETYTCEVCDKGFSRVSSYKTHFRYHSKDTLTFKCSHCNETF-SNRQSLIEHHR 962
Query: 291 E 289
E
Sbjct: 963 E 963
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 435 KIAE*IFXNTSTFLKHFTYHQELQQ*RRCSHCRDLF 328
++ + F S++ HF YH + +CSHC + F
Sbjct: 1033 QVCDKAFSRVSSYKTHFRYHSKDSLTFKCSHCNETF 1068
>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
Length = 560
Score = 31.5 bits (68), Expect = 0.93
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 258 DVSDVNSSKDAQDESRNSIDENKEKDHDNA 347
DV D+N DA DE+ NS ++ + DHD+A
Sbjct: 423 DVDDINGDDDADDENINS--DDADDDHDDA 450
>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
Length = 323
Score = 31.5 bits (68), Expect = 0.93
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 255 TDVSDVNSSKDAQDES--RNSIDENKEKDHDNASSAS 359
TD ++SSKD DES N DE+ E D N S S
Sbjct: 74 TDERGISSSKDESDESDESNESDESNESDKSNESDES 110
>SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7)
Length = 205
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +2
Query: 497 VSANLLFSKQNIFRFSKVTINLLCIMISAYQFECI 601
VS +L+F ++ FRF++V+ +L+ + S ++F C+
Sbjct: 164 VSGSLVFQVRSCFRFARVSGSLVFQVRSCFRFTCV 198
>SB_54255| Best HMM Match : DUF329 (HMM E-Value=7.8)
Length = 82
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +3
Query: 120 LFXNWFSTXA*KFCKMGNXKCKSVKITQSXPVAEXXXNERXXTLKTDVSDVNSSKDAQDE 299
++ N+ + + G + K+TQ E NE + + S K++Q+E
Sbjct: 9 IYKNYMQFASSRITDFGELIKEDKKVTQEDQEPEKKSNESDPQKDQETDNKTSKKESQEE 68
Query: 300 SRNSIDENKEKD 335
R + + K+KD
Sbjct: 69 LREADETPKKKD 80
>SB_22167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1612
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +3
Query: 183 KSVKITQSXPVAEXXXNERXXTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSAST 362
K +K+T S + N+ T+ +SD Q++S + +E D +N ++ S
Sbjct: 510 KQMKLTSSESPDDEPFNDLDVTMLDYISDAGKETTVQNDSSEGRNPLREVDPNNPNNLSE 569
Query: 363 VE 368
+E
Sbjct: 570 IE 571
>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
Length = 497
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 258 DVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 383
D S+ +S+KD D N D NKE D D + + E ++DK
Sbjct: 294 DSSEEDSAKDKNDSVTNG-DVNKEDDKDKENQDVSKENVNDK 334
>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 252 KTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDD 380
++D D +S D +DE ++E+ ++ + + +TVE DD
Sbjct: 89 ESDDDDYSSRNDEEDEDAEEVEEHDGENAEVSQEVNTVETDDD 131
>SB_23520| Best HMM Match : TIL (HMM E-Value=0.0062)
Length = 238
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 183 KSVKITQSXPVAEXXXNERXXTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDN 344
K+ T++ AE + T T + N+ K D+ RN D N + +H+N
Sbjct: 166 KATTTTKTSVKAEATTTKPEATTPTTTTTTNNKK--ADDDRNDEDNNNDSNHNN 217
>SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)
Length = 566
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 216 AEXXXNERXXTLKTDVSDVNSSKDAQDESRNSIDENKEKDH-DNASSASTVEVLDD 380
+E N L+ D D N K A D ++D++ + DH A+ + + DD
Sbjct: 376 SEKAENPDEINLEDDNDDSNHGKKATDPDEINLDDSDDSDHGKKATDPDEINLEDD 431
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,836
Number of Sequences: 59808
Number of extensions: 298470
Number of successful extensions: 952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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