Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H07
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF038606-1|AAB92025.1|   59|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z54327-12|CAD56557.1|  543|Caenorhabditis elegans Hypothetical p...    28   10.0 
Z54327-11|CAD56556.1|  589|Caenorhabditis elegans Hypothetical p...    28   10.0 
Z54307-8|CAD56577.1|  543|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z54307-7|CAD56576.1|  589|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z54307-5|CAD56575.1|  513|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z54307-4|CAD56574.1|  510|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z54307-3|CAD56573.1|  516|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z54307-2|CAD56572.1|  503|Caenorhabditis elegans Hypothetical pr...    28   10.0 
Z54307-1|CAA91092.2|  493|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    28   10.0 
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    28   10.0 
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    28   10.0 
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    28   10.0 
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      28   10.0 

>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +2

Query: 422 YSAILKTQRLF*LIFLHTFSNAIYFVSANLLF-SKQNIFRFSKVTINLLCIMISAYQFEC 598
           YS +   +  F  I+LH    +++   ANL   +K  +F   ++TI L C++   Y F+ 
Sbjct: 100 YSPVYAIRSYF-YIYLHYIPASLF---ANLFGDTKIVVFTLIRLTIGLFCLLGEYYAFDA 155

Query: 599 II*CRYCDLACSKCVLFYN 655
           I  C+  ++A  +  + ++
Sbjct: 156 I--CKKINIATGRFFILFS 172


>U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical
           protein K04C2.2 protein.
          Length = 990

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 258 DVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLD 377
           D S++ S  +  DE+ +S D+++E+D D  + A   E+LD
Sbjct: 597 DESEIPSG-NGDDEASDSDDDDEEEDDDEGNEAVDQELLD 635


>AL031633-9|CAA21023.1|  636|Caenorhabditis elegans Hypothetical
           protein Y39A1A.12 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 246 TLKTDVSDVNSSKDA--QDESRNSIDENKEKDHDN 344
           T K+D S  +SS D+  +DE   + DE K  DHDN
Sbjct: 49  TYKSDSSSSSSSSDSDGEDEYAATKDELKAVDHDN 83


>AF038606-1|AAB92025.1|   59|Caenorhabditis elegans Hypothetical
           protein C04C3.4 protein.
          Length = 59

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 470 HTFSNAIYFVSANLLFSKQNIFRFSKVTINL 562
           H  +N+  F+ +  +F+KQN+++F    IN+
Sbjct: 29  HRINNSTKFIFSFFMFNKQNLWQFFSFCINI 59


>Z54327-12|CAD56557.1|  543|Caenorhabditis elegans Hypothetical
           protein F14F11.1c protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 461 LIKIIFGSLKLLNRFFXTHPHF*NTSLIIKNFNSRGAARIVVIFFFVLVYTI 306
           L+ + F S+  + R F    HF    ++I+ F +      +++FF +L   I
Sbjct: 343 LVTLDFLSMICVLRLFKLTQHFSGLKILIQTFKASAQELFLLVFFVILAIVI 394


>Z54327-11|CAD56556.1|  589|Caenorhabditis elegans Hypothetical
           protein F14F11.1b protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 461 LIKIIFGSLKLLNRFFXTHPHF*NTSLIIKNFNSRGAARIVVIFFFVLVYTI 306
           L+ + F S+  + R F    HF    ++I+ F +      +++FF +L   I
Sbjct: 389 LVTLDFLSMICVLRLFKLTQHFSGLKILIQTFKASAQELFLLVFFVILAIVI 440


>Z54307-8|CAD56577.1|  543|Caenorhabditis elegans Hypothetical
           protein F14F11.1c protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 461 LIKIIFGSLKLLNRFFXTHPHF*NTSLIIKNFNSRGAARIVVIFFFVLVYTI 306
           L+ + F S+  + R F    HF    ++I+ F +      +++FF +L   I
Sbjct: 343 LVTLDFLSMICVLRLFKLTQHFSGLKILIQTFKASAQELFLLVFFVILAIVI 394


>Z54307-7|CAD56576.1|  589|Caenorhabditis elegans Hypothetical
           protein F14F11.1b protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 461 LIKIIFGSLKLLNRFFXTHPHF*NTSLIIKNFNSRGAARIVVIFFFVLVYTI 306
           L+ + F S+  + R F    HF    ++I+ F +      +++FF +L   I
Sbjct: 389 LVTLDFLSMICVLRLFKLTQHFSGLKILIQTFKASAQELFLLVFFVILAIVI 440


>Z54307-5|CAD56575.1|  513|Caenorhabditis elegans Hypothetical
           protein F14F11.1g protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 461 LIKIIFGSLKLLNRFFXTHPHF*NTSLIIKNFNSRGAARIVVIFFFVLVYTI 306
           L+ + F S+  + R F    HF    ++I+ F +      +++FF +L   I
Sbjct: 313 LVTLDFLSMICVLRLFKLTQHFSGLKILIQTFKASAQELFLLVFFVILAIVI 364


>Z54307-4|CAD56574.1|  510|Caenorhabditis elegans Hypothetical
           protein F14F11.1f protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 461 LIKIIFGSLKLLNRFFXTHPHF*NTSLIIKNFNSRGAARIVVIFFFVLVYTI 306
           L+ + F S+  + R F    HF    ++I+ F +      +++FF +L   I
Sbjct: 310 LVTLDFLSMICVLRLFKLTQHFSGLKILIQTFKASAQELFLLVFFVILAIVI 361


>Z54307-3|CAD56573.1|  516|Caenorhabditis elegans Hypothetical
           protein F14F11.1e protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 461 LIKIIFGSLKLLNRFFXTHPHF*NTSLIIKNFNSRGAARIVVIFFFVLVYTI 306
           L+ + F S+  + R F    HF    ++I+ F +      +++FF +L   I
Sbjct: 316 LVTLDFLSMICVLRLFKLTQHFSGLKILIQTFKASAQELFLLVFFVILAIVI 367


>Z54307-2|CAD56572.1|  503|Caenorhabditis elegans Hypothetical
           protein F14F11.1d protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 461 LIKIIFGSLKLLNRFFXTHPHF*NTSLIIKNFNSRGAARIVVIFFFVLVYTI 306
           L+ + F S+  + R F    HF    ++I+ F +      +++FF +L   I
Sbjct: 303 LVTLDFLSMICVLRLFKLTQHFSGLKILIQTFKASAQELFLLVFFVILAIVI 354


>Z54307-1|CAA91092.2|  493|Caenorhabditis elegans Hypothetical
           protein F14F11.1a protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 461 LIKIIFGSLKLLNRFFXTHPHF*NTSLIIKNFNSRGAARIVVIFFFVLVYTI 306
           L+ + F S+  + R F    HF    ++I+ F +      +++FF +L   I
Sbjct: 293 LVTLDFLSMICVLRLFKLTQHFSGLKILIQTFKASAQELFLLVFFVILAIVI 344


>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 566 IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 465
           I D W ++W+ E Y ++ + NL  +NR   + CAK
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 902


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 566 IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 465
           I D W ++W+ E Y ++ + NL  +NR   + CAK
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 902


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
            isoform b protein.
          Length = 1444

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 566  IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 465
            I D W ++W+ E Y ++ + NL  +NR   + CAK
Sbjct: 906  IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 937


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 566 IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 465
           I D W ++W+ E Y ++ + NL  +NR   + CAK
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 902


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 566 IEDLW-LLWKNEIYFVLKITNLH*QNRLRSKMCAK 465
           I D W ++W+ E Y ++ + NL  +NR   + CAK
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNR---QQCAK 902


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,757
Number of Sequences: 27780
Number of extensions: 249596
Number of successful extensions: 740
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)