Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H07
         (871 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    31   1.3  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    29   3.1  
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative...    29   4.0  
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ...    29   5.3  
At3g10680.1 68416.m01284 heat shock protein-related contains wea...    28   9.3  

>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 156 FCKMGNXKCKSVKITQSXPVAEXXXNERXXTLKTDVSDVNSSKDAQDESRNSIDENKEKD 335
           FC   N +CK   I +    +E   ++    +  DVSD  S+  + D S +  D   +  
Sbjct: 617 FCIQCNSRCKVSVILKILKDSEDGSDDGSDDVSDDVSDDPSNDVSDDTSDDDSDVVSDVV 676

Query: 336 HDNASSASTVEVLDD 380
            D+AS+  + +  DD
Sbjct: 677 SDDASNDDSDDTSDD 691


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 694  KLTRGYQLIWHSVVVK*HTFTACKVTISA-LNNTFKLICTNHNT*KI 557
            +L RG+Q IW S++    TF++  V + A L     +I +NH T KI
Sbjct: 1281 ELDRGWQSIWSSLIHGLATFSSMSVIVDAVLVLLGSIISSNHITVKI 1327


>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
           (UBP1) similar to GI:11993461
          Length = 1083

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 201 QSXPVAEXXXNERXXTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDD 380
           QS P  E   NE    L +DVSD   S +A+  ++  +   +   HDN  +  TV   +D
Sbjct: 414 QSRP--ETSDNETDLVLLSDVSDTAPSTEAKGVNQILVGSTETLMHDNDRTGKTVPDKED 471


>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
           protein contains Pfam domain PF00076: RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 461

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 246 TLKTDVSDVNSSKDAQDESRNSIDENKEKDHD 341
           T   D +D N S  A+ ES  S DE+K+  HD
Sbjct: 283 TKNLDAADKNGSLTAKAESIASKDESKDNSHD 314


>At3g10680.1 68416.m01284 heat shock protein-related contains weak
           similarity to Pfam profile PF00011: Hsp20/alpha
           crystallin family
          Length = 490

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/51 (31%), Positives = 20/51 (39%)
 Frame = +3

Query: 231 NERXXTLKTDVSDVNSSKDAQDESRNSIDENKEKDHDNASSASTVEVLDDK 383
           N+    LKT   D     D  D  RN  DEN E   D  S     + ++ K
Sbjct: 352 NQAEPKLKTKEGDERIKLDVDDGVRNKQDENNEMVGDMVSEGEIQDRVEQK 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,474
Number of Sequences: 28952
Number of extensions: 201384
Number of successful extensions: 545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)