Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H06
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    27   2.7  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   6.1  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +2

Query: 329 LAPRAPRTLFTIASPXEFRLIFAENNIKLMYKRHGLALTLGDSDINGRIAFGDSKDKTSP 508
           + P  P+T   I    E   I  E  + L  K+ GLAL   D  +  RI   DS   T P
Sbjct: 88  IKPDVPKTQSRIRQAYEGLSILNEAEVYLKNKQAGLALNALDR-LQRRI---DS--TTQP 141

Query: 509 RVSWMFI 529
            +SWM++
Sbjct: 142 PMSWMYL 148


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 485 DSKDKTSPRVSWMFIPLWENDKVYFKILNTKRNQYLTLGV 604
           D+KD++   V+ +++P  E +   + +   K   YL L V
Sbjct: 195 DTKDRSGSHVNRIYVPKAEQEMYEYYVRAAKERPYLNLQV 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,130
Number of Sequences: 5004
Number of extensions: 45988
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)