Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H06
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48470| Best HMM Match : HNOB (HMM E-Value=0)                        30   2.8  
SB_47978| Best HMM Match : W2 (HMM E-Value=4.7)                        29   5.0  
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)                   29   5.0  
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)                   29   5.0  
SB_30663| Best HMM Match : rve (HMM E-Value=3.3e-25)                   29   5.0  
SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)                   29   5.0  
SB_48524| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_18382| Best HMM Match : Kinesin (HMM E-Value=2.3e-14)               28   8.7  

>SB_48470| Best HMM Match : HNOB (HMM E-Value=0)
          Length = 681

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 471 LPFISESPNVKASP*RLYISLMLFSANISLNSXGEAIVNNVLGALG 334
           LP I E+PN+K+ P   + ++  FS  IS N       +++L  LG
Sbjct: 197 LPVIHEAPNLKSMPLENFFNIFPFSFVISANMRISMAGHSLLSILG 242


>SB_47978| Best HMM Match : W2 (HMM E-Value=4.7)
          Length = 195

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 10  PPLAXLGXSLSFEFVLGXKXHCHSKNEARSYHPVSFRGVFVCR-RSRRLQLHSKGRALQQ 186
           PPL      L+ E   G    C+S    +SY   ++ G  VC+ +   L + + G  + Q
Sbjct: 27  PPLGDYLGDLTSELDEGDFIDCYSSTGPKSYAYTTYSGKSVCKVKGLHLNVRTAG-IVNQ 85

Query: 187 HPRLRITTALLR 222
              + + TAL R
Sbjct: 86  KTMIELLTALER 97


>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1575

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 10   PPLAXLGXSLSFEFVLGXKXHCHSKNEARSYHPVSFRGVFVCR-RSRRLQLHSKGRALQQ 186
            PPL      L+ E   G    C+S    +SY   ++ G  VC+ +   L + + G  + Q
Sbjct: 1181 PPLGDYLGDLTSELDEGDFIDCYSSTGPKSYAYTTYSGKSVCKVKGLHLNVRTAG-IVNQ 1239

Query: 187  HPRLRITTALLR 222
               + + TAL R
Sbjct: 1240 KTMIELLTALER 1251


>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1725

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 10  PPLAXLGXSLSFEFVLGXKXHCHSKNEARSYHPVSFRGVFVCR-RSRRLQLHSKGRALQQ 186
           PPL      L+ E   G    C+S    +SY   ++ G  VC+ +   L + + G  + Q
Sbjct: 222 PPLGDYLGDLTSELDEGDFIDCYSSTGPKSYAYTTYSGKSVCKVKGLHLNVRTAG-IVNQ 280

Query: 187 HPRLRITTALLR 222
              + + TAL R
Sbjct: 281 KTMIELLTALER 292


>SB_30663| Best HMM Match : rve (HMM E-Value=3.3e-25)
          Length = 346

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 10  PPLAXLGXSLSFEFVLGXKXHCHSKNEARSYHPVSFRGVFVCR-RSRRLQLHSKGRALQQ 186
           PPL      L+ E   G    C+S    +SY   ++ G  VC+ +   L + + G  + Q
Sbjct: 37  PPLGDYLGDLTSELDEGDFIDCYSSTGPKSYAYTTYSGKSVCKVKGLHLNVRTAG-IVNQ 95

Query: 187 HPRLRITTALLR 222
              + + TAL R
Sbjct: 96  KTMIELLTALER 107


>SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)
          Length = 889

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 10  PPLAXLGXSLSFEFVLGXKXHCHSKNEARSYHPVSFRGVFVCR-RSRRLQLHSKGRALQQ 186
           PPL      L+ E   G    C+S    +SY   ++ G  VC+ +   L + + G  + Q
Sbjct: 153 PPLGDYLGDLTSELDEGDFIDCYSSTGPKSYAYTTYSGKSVCKVKGLHLNVRTAG-IVNQ 211

Query: 187 HPRLRITTALLR 222
              + + TAL R
Sbjct: 212 KTMIELLTALER 223


>SB_48524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 320 LPALAPRAPRTLFTIASPXEFRLIFAENNIKLMYKRHGLALT 445
           L ALAP  P  + T   P + RL FA+ N KL+ +  G +LT
Sbjct: 90  LEALAPYQPLAMKTCYCPIDPRLNFAQAN-KLLKELQGCSLT 130


>SB_18382| Best HMM Match : Kinesin (HMM E-Value=2.3e-14)
          Length = 278

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 790 RIQXPRRGXVPNITLGGIK 846
           RI+ PRRG +PNI++ G +
Sbjct: 8   RIRPPRRGEIPNISVSGTR 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,336,619
Number of Sequences: 59808
Number of extensions: 345750
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)