Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H06
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    25   0.70 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    24   2.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.6  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +2

Query: 287 TKQQDELHGVRLPALAPRAPRTLFTIASPXEFRLIFAENNIKLMYKRHGLALTLGDSDIN 466
           T++    H  +  +   + PRT F+       +  FAEN      +R  L+  LG ++  
Sbjct: 4   TRRVKRSHNGKNGSPEEKRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63

Query: 467 GRIAFGDSKDK 499
            +I F + + K
Sbjct: 64  IKIWFQNKRAK 74


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 338 RAPRTLFTIASPXEFRLIFAENNIKLMYKRHGLALTLGDSDINGRIAFGDSKDK 499
           + PRT F+       +  FAEN      +R  L+  LG ++   +I F + + K
Sbjct: 21  KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAK 74


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 96  TGFIFGVTMXFVPENELKA*G 34
           + F+FG    F P  EL A G
Sbjct: 54  SAFLFGANALFTPGQELPARG 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,131
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)