Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H05
         (1275 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0603 - 11150739-11150746,11150791-11151340                       29   5.9  
07_03_1788 + 29523216-29524867,29525048-29525075                       29   5.9  
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794...    29   7.8  
05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621           29   7.8  

>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -1

Query: 195 PPGCXVXAXPPXPXXTRSXRLXXXX-AXSSXLXLPXPPPPXTTXXPXPXNGGXP 37
           PP   + A    P  +R  RL     A       P PPPP +T  P P +G  P
Sbjct: 12  PPSARLSAA--RPPASRPPRLEKGNFALPPPFGFPPPPPPGSTFVPLPQSGVPP 63


>07_03_1788 + 29523216-29524867,29525048-29525075
          Length = 559

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 96  PXPPPPXTTXXPXPXNGGXPGXSXQGXGVLP 4
           P PPPP T   P P +G   G +  G G  P
Sbjct: 31  PPPPPPATDPNPHPPSGAGAG-AGAGAGACP 60


>11_02_0065 -
           7938007-7938393,7939292-7939435,7940597-7940665,
           7940762-7940809,7941488-7941584,7941688-7941767,
           7941841-7941912,7942256-7942350,7943903-7943984,
           7945176-7945209,7945255-7945262,7945657-7946058
          Length = 505

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = -1

Query: 195 PPGCXVXAXPPXPXXTRSXRLXXXXAXSSXL-XLPXPPPPXTTXXPXPXNGGXPG 34
           PP   V A PP P   R          ++    +P PPPP     P    GG  G
Sbjct: 45  PPQAAVAAPPPPPQVIRVFAAAPPPPPAAFFAAVPPPPPPPFEYYPAVGGGGGFG 99


>05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621
          Length = 283

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = -1

Query: 168 PPXPXXTRSXRLXXXXAXSSXLXLPXPPPPXTTXXPXPXNGGXPGXSXQGXGV 10
           PP P    +              LP PPP      P P + G  G S  G GV
Sbjct: 26  PPPPDEREAGDFGEGWVLGVDGDLPPPPPDDGGEFPPPPDDGGEGVSEGGAGV 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,415,965
Number of Sequences: 37544
Number of extensions: 128000
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)