Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H04
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 459  YILSRLTCGTKY 424
            Y L +L CGT+Y
Sbjct: 1452 YTLEKLLCGTRY 1463


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 326 SVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKI 457
           SVA        PY L+SP    +A  V++  PP+   Q  R+ +
Sbjct: 707 SVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV 750


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 326 SVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKI 457
           SVA        PY L+SP    +A  V++  PP+   Q  R+ +
Sbjct: 599 SVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV 642


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 407 EIGGPPYLVPQVKRDKIYXLAKLLEHLNRXP 499
           E+G  P L P VKR  +  LA  L    + P
Sbjct: 120 EVGRFPGLDPVVKRRLLQHLASCLNQGQKEP 150


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,571
Number of Sequences: 336
Number of extensions: 3742
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)