Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H04
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.6  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   6.3  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    26   6.3  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 688  WSRRWAAVAGGSRCCPWALLLGAPTLFWYXW 596
            + R W  + GGS   PW +L  A  LF   W
Sbjct: 2164 YGRSWKYLWGGSLLAPWKMLTIAFFLFLSMW 2194


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 531 HGPAPAPARKAGSRFKCSSSLAXSYILSRLTCGTKYGG 418
           HGP  + A       +    L  S +   LT GT++GG
Sbjct: 420 HGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGG 457


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 428 LVPQVKRDKIYXLAKLLEHLNR 493
           LVP  K  K Y L  L +HLNR
Sbjct: 260 LVPNEKNPKEYILKLLFDHLNR 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,367
Number of Sequences: 5004
Number of extensions: 56195
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)