Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H04
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)                     36   0.044
SB_42811| Best HMM Match : SRCR (HMM E-Value=0)                        33   0.31 
SB_56146| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 28   8.8  

>SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)
          Length = 522

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = +2

Query: 275 ACVLSNGLTTNFKFVEVSVADSPDLTEPPYYLKSPGLT-----GDAKLVEIGGPPYLVPQ 439
           A  +S+  T+N K +     +  DL  PP    + GL      G  ++V++GGP YL+P 
Sbjct: 256 AASMSSRSTSNEKELSKFPVEDVDLYVPPLDELAKGLILLGFGGKPRIVDVGGPAYLLPL 315

Query: 440 VKRDKIYXL 466
            + +KIY +
Sbjct: 316 PQLNKIYDM 324


>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 854

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 489 TAXPPSSPALEPDRGRTW--GVNCEGIVNLSVRNGTVDXXYQNSVG 620
           TA PP  P+ +  RGR W  GVNC G  + S+R  +      N  G
Sbjct: 298 TATPPDVPSSDSGRGRVWLSGVNCRGYES-SIRTCSTRGWGNNGCG 342


>SB_56146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 399 NWSRSGARRT*CRRSNATRYTXWPSCWNT*TAXPPSSPALEPDRGRTWGVNCEGIVN 569
           +W R+  R    RR    + T WP   N+ T  P  +  +  +  + WG +C+G+ N
Sbjct: 16  SWYRAPPRG---RRCLIQKSTPWPQACNSFTRLPDDTSFISRNC-QYWGSSCDGVCN 68


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 428 LVPQVKRDKIYXLAKLLEHLNRXPAF 505
           +VP VK++ +   A+++++LNR P F
Sbjct: 359 VVPHVKKEDLEYFAEVIDNLNRTPKF 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,639,343
Number of Sequences: 59808
Number of extensions: 479241
Number of successful extensions: 1005
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)