Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H04
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 567 LLYPRSSRPRYGHGPAPAPARKAGSR 490
           LL  RS +   G  P P PA+KA  R
Sbjct: 372 LLSGRSQKSTTGPPPGPTPAQKARMR 397


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 77  HSLLHRTPQHH 109
           HS +H TP HH
Sbjct: 423 HSHIHATPHHH 433


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 610 FWYXWSTVPLRTL 572
           FW  W+ VP R +
Sbjct: 322 FWLEWNAVPARVM 334


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 610 FWYXWSTVPLRTL 572
           FW  W+ VP R +
Sbjct: 291 FWLEWNAVPARVM 303


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 610 FWYXWSTVPLRTL 572
           FW  W+ VP R +
Sbjct: 342 FWLEWNAVPARVM 354


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 610 FWYXWSTVPLRTL 572
           FW  W+ VP R +
Sbjct: 291 FWLEWNAVPARVM 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,573
Number of Sequences: 438
Number of extensions: 4858
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)