Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H03
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    33   0.38 
05_03_0515 + 14930736-14932697                                         30   2.7  
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    29   3.5  
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    29   3.5  
04_04_0347 + 24564589-24565296                                         29   3.5  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    28   8.1  

>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 301 IINEGRVEGDKYQISIHLPGYEQKDINVK 387
           ++ E +VEGD Y + +H PG+  K ++V+
Sbjct: 220 VVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248


>05_03_0515 + 14930736-14932697
          Length = 653

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 87  IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSNLANEMQHLD 263
           + L +C +   V  +P  +    +W YH     + YV +S+  ++ S WSN   +   L 
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLS 367

Query: 264 DMMKE 278
               +
Sbjct: 368 SCFSD 372


>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 301 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 459
           I ++G++EG +  I  H+P  E  D+ V + +   +   +S   H  K  N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403


>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
            18230710-18231949,18232085-18232419,18232500-18232577,
            18232872-18232978,18233020-18233062
          Length = 1506

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 222  SLWSNLANEMQHLDDMMKELSLKFPSH-YKRRTRGRRQVSDIYSPAWLRTERHQRESEKW 398
            S++ +  NE+ H  D++   +   P +     T+  R++SD   P   RTE H R     
Sbjct: 1225 SIFLDTGNELNHQTDLINGHANDKPKNSLAASTKRERKISDSLHPRLRRTELHNRNGRHQ 1284

Query: 399  S 401
            S
Sbjct: 1285 S 1285


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 84  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 185
           M  L+   LLAA SAA   +H  ++ PY HH+ P+
Sbjct: 5   MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = +3

Query: 66  VERSTRMIALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLAN 245
           V   T ++ L++C +L  ++     + G++ +     D  SP+      D ++ WS+ +N
Sbjct: 75  VSNKTVIVTLLVCVILTTIA-----FLGTTAYYLRRKDALSPHSHAYSFDKYTSWSSRSN 129

Query: 246 EMQH 257
            + H
Sbjct: 130 LVSH 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,952,180
Number of Sequences: 37544
Number of extensions: 360532
Number of successful extensions: 1024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)