Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H03
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19502| Best HMM Match : UPF0181 (HMM E-Value=1.2)                   31   1.2  
SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4)                   29   3.6  
SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               29   6.3  

>SB_19502| Best HMM Match : UPF0181 (HMM E-Value=1.2)
          Length = 423

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 366 FVTRQVNRYLILVAFHASFVYNDWGTSTTAPSSCRPSVAFRWQ 238
           +VT +V   LIL   H     + WGT  + PSS +PS+   W+
Sbjct: 172 YVTNEVELDLILT-LHKQHTNSCWGTRQS-PSSAKPSIRLMWK 212


>SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4)
          Length = 835

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 84  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPFSPYVRESMLDTHSLWSNLANEMQHL 260
           M+ ++  G+   VS      HG ++ PY   YDP  P    + LD ++LW     E+   
Sbjct: 65  MLLMIEKGIRGGVSMISNR-HGEANNPYMKEYDPDLPTKYITYLDANNLWMG-DQELSGW 122

Query: 261 DD--MMKELSLKFPSH 302
            D   + E+ L++P H
Sbjct: 123 RDRPCILEVDLEYPHH 138


>SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 971

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 84   MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPFSPYVRESMLDTHSLWSNLANEMQHL 260
            M+ ++  G+   VS      HG ++ PY   YDP  P    + LD ++LW     E+   
Sbjct: 801  MLLMIEKGIRGGVSMISNR-HGEANNPYMKEYDPDLPTKYITYLDANNLWMG-DQELSGW 858

Query: 261  DD--MMKELSLKFPSH 302
             D   + E+ L++P H
Sbjct: 859  RDRPCILEVDLEYPHH 874


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = +3

Query: 135 QYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDD-MMKELSLKFPSH 302
           +YY G+ H   H+  P  PYV      +H   +NL          MM      FP H
Sbjct: 502 RYYPGTRHESQHYMPPRQPYVTTHNHHSHDHNNNLTTAFPFGGQRMMTPAHAYFPQH 558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,395,304
Number of Sequences: 59808
Number of extensions: 406748
Number of successful extensions: 1130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)