Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_H03
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ...    33   0.32 
At1g22060.1 68414.m02759 expressed protein                             31   0.73 
At4g34920.1 68417.m04951 1-phosphatidylinositol phosphodiesteras...    28   6.8  
At3g52490.1 68416.m05772 heat shock protein-related contains sim...    28   6.8  

>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 324

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 141 YHGSSH-WPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSHYKRRT 317
           Y G +H  PY  Y P++     S+ DT   ++   + M + ++ ++E   ++ +  K+R 
Sbjct: 231 YDGRTHSLPYEKYGPYTCPKCNSVFDTSQKFAAHISSMHYKNESIEEKFKRYNARNKKRL 290

Query: 318 RGRRQV 335
           R R Q+
Sbjct: 291 RKRNQM 296


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 201  ESMLDTHSLWSNLANEMQHLDDMMKELSLKF 293
            E MLDT   +S++  E++ + D   +LSLKF
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKF 1962


>At4g34920.1 68417.m04951 1-phosphatidylinositol
           phosphodiesterase-related contains weak similarity to
           1-phosphatidylinositol phosphodiesterase precursor (EC
           3.1.4.10) (Phosphatidylinositol-specific phospholipase
           C) (PI-PLC). (Swiss-Prot:P34024) [Listeria
           monocytogenes]
          Length = 318

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 186 SPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKF 293
           S Y++++ +DT   W+   + ++HL +     S KF
Sbjct: 209 SDYLKDNWIDTDLPWTKFQSNLKHLSEQQPTSSRKF 244


>At3g52490.1 68416.m05772 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 815

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 195 VRESMLDTHSLWSNLANEMQHLDDMM---KELSLKFPSHYKRRTRGRRQVSDIYSPAWLR 365
           V ES L+      N++ ++Q   D +   +E S+KF S  +        V+ +  PAWL+
Sbjct: 377 VSESELEVKKS-ENVSLQLQQSSDQLSFCEECSVKFESEARFLKSSNSNVTTVALPAWLQ 435

Query: 366 TERHQRESEKWSAD 407
             + + ++    +D
Sbjct: 436 QYKKENQNSHTDSD 449


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,458
Number of Sequences: 28952
Number of extensions: 274288
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)