Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_H02
(863 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 87 4e-16
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 4e-09
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 63 1e-08
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 58 4e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 2e-06
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 55 3e-06
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 51 4e-05
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 46 0.002
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 42 0.020
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.081
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 87.4 bits (207), Expect = 4e-16
Identities = 51/84 (60%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Frame = +3
Query: 546 TSITKIDAQVRGGETRQDYKDTRRFPLXS---SLVRSPVPTLPXTGYLSAFLPSGSVALL 716
TSITKIDAQVRGGETRQDYKDTRRFPL + +L+ P LP T F + L
Sbjct: 24 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPC-RLPDT--CPPFSLREAWRFL 80
Query: 717 IXHAVXISXRCXSFXPXWAVXTNP 788
I HAV IS RC SF P WAV TNP
Sbjct: 81 IAHAVGISVRCRSFAPSWAVCTNP 104
Score = 71.3 bits (167), Expect = 3e-11
Identities = 29/31 (93%), Positives = 29/31 (93%)
Frame = +1
Query: 622 PWXAPSCALLFRPCRLPDTCPPFSLREAWRF 714
P APSCALLFRPCRLPDTCPPFSLREAWRF
Sbjct: 49 PLEAPSCALLFRPCRLPDTCPPFSLREAWRF 79
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.1 bits (149), Expect = 4e-09
Identities = 38/57 (66%), Positives = 39/57 (68%)
Frame = -3
Query: 543 RGAEPMEKRQQRGLFTVPGLLLAFCSHVLSXVIPLILWITVLPPLSELIPLAAAERP 373
RGAEPMEKR + L V LL CS L PLILWITVLPPLSEL PLAA ERP
Sbjct: 4 RGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 62.9 bits (146), Expect = 1e-08
Identities = 33/60 (55%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = -1
Query: 788 GVCXHSPXWXERXTPX*DTYSVXYEKR-HASRREKGGQVSGXRQGRNRRAHEGAXQGETP 612
GV +SP W ER P DT SV YEK + +K QVSG RQGRNRRAHEGA ++P
Sbjct: 27 GVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQVSGKRQGRNRRAHEGAAGEKSP 86
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 57.6 bits (133), Expect = 4e-07
Identities = 44/121 (36%), Positives = 51/121 (42%)
Frame = +1
Query: 310 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGDNAGKNMXXXXXXXX 489
R +C G +PLPRSLTR ARSFGCGERY+LT GD N
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT----------DGDG---NFLEDTRKTL 72
Query: 490 XXXXXXXXXXFFHRLRPPXRASQKSTLKSEVAKPDRTIKIPGVSPWXAPSCALLFRPCRL 669
F P + KS + + + K P P APSCALLF P L
Sbjct: 73 SKEEIRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGL 132
Query: 670 P 672
P
Sbjct: 133 P 133
Score = 50.4 bits (115), Expect = 6e-05
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = +3
Query: 546 TSITKIDAQVRGGETRQDYKDTRRFPL 626
TSI K DAQ+ GGETRQDYKD RRFPL
Sbjct: 92 TSIAKSDAQISGGETRQDYKDPRRFPL 118
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.6 bits (128), Expect = 2e-06
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 286 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQG 444
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 54.8 bits (126), Expect = 3e-06
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +3
Query: 546 TSITKIDAQVRGGETRQDYKDTRRFPL 626
TSITK DAQ+ GGETRQDYKDTRRFPL
Sbjct: 60 TSITKSDAQISGGETRQDYKDTRRFPL 86
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 639 VRSPVPTLPXTGYLSAFLPSGSVAL 713
+RSPVPTLP TGYLSAFLPSGSVAL
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVAL 25
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 45.6 bits (103), Expect = 0.002
Identities = 32/76 (42%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 573 VRGGETRQDYK----DTRRFPLXSSLVRSPVPTLPXTGYLSAFLPSGSVALLIXHAVXIS 740
VR GETRQD K PL S V +P + F +GSVAL IS
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIP----VPPFSLAGSVALSHSSHSGIS 78
Query: 741 XRCXSFXPXWAVXTNP 788
RC SF P WAV NP
Sbjct: 79 ARCRSFAPSWAVSKNP 94
Score = 44.8 bits (101), Expect = 0.003
Identities = 28/72 (38%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +2
Query: 632 LPRALSCSDPAXYRIPVR-LSPFGKRGASHXSRCXYLXSVXVVRSXLGCVXKPPXXPXXX 808
LP ALSCS+PA RIPV S G SH S PP P
Sbjct: 42 LPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCRSFAPSWAVSKNPPFSPTAA 101
Query: 809 PYPVXIXLXPPR 844
PYPV + L P R
Sbjct: 102 PYPVTVHLSPTR 113
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 41.9 bits (94), Expect = 0.020
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +2
Query: 212 INKLTTTIAFILCFRFRXEVWEVFSALMNRPTRGERRFAYW 334
+++LT L RF V +ALMNRPTRGERRFAYW
Sbjct: 1 MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.081
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1
Query: 356 ERGSGRAPNTQTASPRALADSLMQ 285
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,492,222
Number of Sequences: 1657284
Number of extensions: 11050617
Number of successful extensions: 27501
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27479
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -