Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G24
         (1445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         39   0.009
01_06_0146 + 26969011-26969995,26970878-26970930                       33   0.42 
04_03_0499 - 16581343-16581469,16581563-16581676,16581896-165819...    32   0.98 
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    32   1.3  
12_02_1174 - 26696869-26698191                                         31   1.7  
12_02_0326 + 17555731-17556387                                         31   1.7  
07_03_0089 - 13300902-13301645                                         31   2.3  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     29   6.9  

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 39.1 bits (87), Expect = 0.009
 Identities = 49/226 (21%), Positives = 60/226 (26%), Gaps = 15/226 (6%)
 Frame = +1

Query: 478  PPXTQDHQKPHHXNPXXXXPXXNRRXXXXHPXXPQPXXXQTTSNXPXTDXPQT------- 636
            PP  ++H+ PHH  P    P    +     P  P P     T     T  P T       
Sbjct: 47   PP--KEHKPPHHHEPKPEKPPKEHKPPAYTPPKPTPTPPTYTPTPKPTPPPYTPKPTPPA 104

Query: 637  XTXTTXRXNPXXQXPXXKXXGXQ-QTLRLXXEXXXTPXXPTQXXXXTXTXKPTXRXKRQH 813
             T T     P    P       + Q          TP  PT       T  PT + + + 
Sbjct: 105  HTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPTYKPQPKP 164

Query: 814  APN----XXTXXNNKRXPKKXSXTHXXTATXXT---QXAETQXPXXSXPXXXKRXPXXXS 972
             P       T  + K  PK     +  T T  +   Q   T  P    P      P    
Sbjct: 165  TPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKP 224

Query: 973  XTPXNXXXXPXHXXPPPTXXAPXXXXXXQTXTXXXHPHXQPTXXPT 1110
              P      P    PP    AP                 QP   PT
Sbjct: 225  NPPPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPT 270



 Score = 34.3 bits (75), Expect = 0.24
 Identities = 29/127 (22%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
 Frame = +1

Query: 271 TPHXRXRXTHAXXPTPQXXKXXXRAQPTXPTXXTGPXPTXTQ--PNXRXXSKXPXPQHXP 444
           TP+       +  P P+         PT P+    P PT T   P     S  P P+  P
Sbjct: 167 TPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNP 226

Query: 445 GXXQXPRTXGXPPXTQDHQKP-HHXNPXXXXPXXNRRXXXXHPXXPQPXXXQTTSNXPXT 621
                P+    PP T     P +   P    P   +      P    P   +       T
Sbjct: 227 PPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPT 286

Query: 622 DXPQTXT 642
             P T T
Sbjct: 287 PTPYTPT 293


>01_06_0146 + 26969011-26969995,26970878-26970930
          Length = 345

 Score = 33.5 bits (73), Expect = 0.42
 Identities = 20/77 (25%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
 Frame = +1

Query: 295 THAXXPTPQXXKXXXRAQPTXPTXXTGPXP------TXTQPNXRXXSKXPXPQHXPGXXQ 456
           +H   PTP          P  PT    P P      T   PN       P P   P    
Sbjct: 21  SHPPPPTPHPATDPPPISPQNPTPPPPPLPASAAAPTTPSPNHSGDPSRPIPSQAPAPPP 80

Query: 457 XPRTXGXPPXTQDHQKP 507
            P     PP   D++ P
Sbjct: 81  PPTADPSPPLPHDNRTP 97


>04_03_0499 -
           16581343-16581469,16581563-16581676,16581896-16581931,
           16582964-16583013,16583633-16583705,16583883-16584078,
           16584154-16584445
          Length = 295

 Score = 32.3 bits (70), Expect = 0.98
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 267 EHXPXPXKTNXRKXTHAPXTEXRXKSPTNPTNXRXRTXXHPXPTK 401
           E  P    T  RK  H P T+   K+PTNP + + +    P P+K
Sbjct: 5   EPRPPAAATRKRKKPHKP-TKTLAKNPTNPVSTKAKKKKPPPPSK 48


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 17/66 (25%), Positives = 20/66 (30%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPPXT 489
           P+P        A PT P     P P    P          P   P   Q PR    PP  
Sbjct: 40  PSPTTCYPVSSAAPTAPPPKPSPTPPPASPPPAPTPPQTRPPSPPPQQQQPRPVSPPPVA 99

Query: 490 QDHQKP 507
           + +  P
Sbjct: 100 EPYYWP 105


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 24/93 (25%), Positives = 26/93 (27%), Gaps = 1/93 (1%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQ-XPRTXGXPPX 486
           P P          P  PT      P   QP  +     P P   P      PRT G  P 
Sbjct: 179 PQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDTPA 238

Query: 487 TQDHQKPHHXNPXXXXPXXNRRXXXXHPXXPQP 585
             +  KP    P    P    R     P  P P
Sbjct: 239 VVE-PKPQPPPPPPRAPVKMPRVLEPKPSPPPP 270


>12_02_0326 + 17555731-17556387
          Length = 218

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/60 (28%), Positives = 21/60 (35%)
 Frame = +1

Query: 343 AQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPPXTQDHQKPHHXNP 522
           A P  P    G      +P+ R     P P H P   + P T         H +PHH  P
Sbjct: 23  ASPPPPQPDPG-GKRQRRPSVRLSGSIPLPSHLPHPRRIPITPASRSRKPLHLQPHHPKP 81


>07_03_0089 - 13300902-13301645
          Length = 247

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 29/120 (24%), Positives = 37/120 (30%), Gaps = 1/120 (0%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSK-XPXPQHXPGXXQXPRTXGXPPX 486
           P+PQ            P+    P PT  QP  +   K  P P   P     P+    P  
Sbjct: 58  PSPQPNPQPNPQPDPKPSPQPDPKPT-PQPEPKQDPKPNPQPDPKPSPQPDPKPTPQPDP 116

Query: 487 TQDHQKPHHXNPXXXXPXXNRRXXXXHPXXPQPXXXQTTSNXPXTDXPQTXTXTTXRXNP 666
            QD Q     +P    P             PQP    T    P  D PQ     + + +P
Sbjct: 117 KQDPQPNPQPDP---KPTPQPNPKQDPQPNPQPDPKPTPQPDPKQD-PQPNPQPSPKADP 172


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
 Frame = +1

Query: 340 RAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQ-XPRTXGXPPXTQDHQKPHHX 516
           + +P+ P    GP P   +P  +     P P+  P   +  P+    PP      KP   
Sbjct: 164 KPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGPP 223

Query: 517 NPXXXXP 537
            P    P
Sbjct: 224 QPWWPIP 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.303    0.120    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,286
Number of Sequences: 37544
Number of extensions: 218810
Number of successful extensions: 263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4594434768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)