Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G24
         (1445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  

>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 17/58 (29%), Positives = 20/58 (34%)
 Frame = +1

Query: 478 PPXTQDHQKPHHXNPXXXXPXXNRRXXXXHPXXPQPXXXQTTSNXPXTDXPQTXTXTT 651
           P     H   HH       P   ++         QP   QTT+N P T  P T   TT
Sbjct: 154 PSLPMQHSTEHHSTSGVASPS-TKQPSTALTTTKQPTTQQTTTNLPSTRQPTTNQQTT 210


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
 Frame = +3

Query: 219 TKXKTTKXQXPQXPQXEHXPXPXKTNXRKXTHAPXTEX-RXKSPTNPTNXRXRTXXHPXP 395
           T   T   Q    P       P +T     T  P T   +  +PT  T  +      P P
Sbjct: 43  TPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTPATTPTP 102

Query: 396 TKXTPXXEXXXPTTXPRXXTTP 461
           TK TP      PTT      TP
Sbjct: 103 TKPTPTAHT--PTTPTPTAHTP 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.303    0.120    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,441,860
Number of Sequences: 59808
Number of extensions: 208083
Number of successful extensions: 272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4648159692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)