Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G24
         (1445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    34   0.22 
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    31   2.0  
Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical pr...    29   8.2  

>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 24/82 (29%), Positives = 27/82 (32%)
 Frame = +3

Query: 213 TXTKXKTTKXQXPQXPQXEHXPXPXKTNXRKXTHAPXTEXRXKSPTNPTNXRXRTXXHPX 392
           T T   TT  +    P  E    P  T     T  P T    ++ T PT     T   P 
Sbjct: 97  TTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTT-ETTTTPTTTTTETTTTPT 155

Query: 393 PTKXTPXXEXXXPTTXPRXXTT 458
            T  TP      PTT     TT
Sbjct: 156 TTTTTPTTTTTTPTTTTTTPTT 177


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 27/110 (24%), Positives = 28/110 (25%), Gaps = 1/110 (0%)
 Frame = +1

Query: 349 PTXPTXXTGPXPTXTQ-PNXRXXSKXPXPQHXPGXXQXPRTXGXPPXTQDHQKPHHXNPX 525
           P  P     P PT  Q P  R     P  Q  P   Q   T   P        P   NP 
Sbjct: 358 PAPPVQQAPPKPTPQQAPPVRQNPPMPAVQQAPSSQQA--TQAPPKPAPQQAPPVQQNPP 415

Query: 526 XXXPXXNRRXXXXHPXXPQPXXXQTTSNXPXTDXPQTXTXTTXRXNPXXQ 675
              P          P   Q      TS       P T T      +P  Q
Sbjct: 416 KPTPSPAPPAQKAQPVTQQQASAPPTSPSAPVQAPNTPTQKASSQDPIVQ 465


>Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical
           protein E04D5.3 protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 15/65 (23%), Positives = 20/65 (30%)
 Frame = +3

Query: 249 PQXPQXEHXPXPXKTNXRKXTHAPXTEXRXKSPTNPTNXRXRTXXHPXPTKXTPXXEXXX 428
           PQ P  ++   P +         P        PT P N    +  +P PT   P      
Sbjct: 278 PQCPTSQYVVEPAQKTTETAEPYPYDSHESGYPTRPANYPVASSRYPIPTTQAPASYPSS 337

Query: 429 PTTXP 443
           P   P
Sbjct: 338 PAPPP 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.303    0.120    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,277
Number of Sequences: 27780
Number of extensions: 158193
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4131451166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)