Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G24
         (1445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    34   0.20 
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    33   0.35 
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    33   0.35 
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta...    33   0.62 
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    30   4.3  

>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 34.3 bits (75), Expect = 0.20
 Identities = 17/66 (25%), Positives = 20/66 (30%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPPXT 489
           P P        + P  P   + P P  T PN    S  P P         P T   PP +
Sbjct: 138 PNPPDSSSNPNSNPNPPESSSNPNPPVTVPNPPESSSNPNPPESSSNPNPPITIPYPPES 197

Query: 490 QDHQKP 507
                P
Sbjct: 198 SSPNPP 203


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 24/95 (25%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
 Frame = +1

Query: 202 KPXXXXPKXKQQNXXXH-KXXNXNTPHXRXRXTHAXXPTPQXXKXXXRAQPTXPTXXTGP 378
           KP    P  K      H K      PH +        P P   K   +  P+ P   T P
Sbjct: 75  KPPTVKPHPKPPTVKPHPKPPTVKPPHPKPPTKPHPHPKPPIVKPPTKPPPSTPKPPTKP 134

Query: 379 XPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPP 483
            P+  +P     +K P     P   + P T   PP
Sbjct: 135 PPSTPKP---PTTKPPPSTPKPPHHKPPPTPCPPP 166



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 27/124 (21%), Positives = 34/124 (27%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPPXT 489
           P P          P  P       P    P  +  +  P P+  P     P+    PP  
Sbjct: 34  PAPHKPPKHPVKPPKPPAVKPPKPPAVKPPTPKPPTVKPHPK-PPTVKPHPK----PPTV 88

Query: 490 QDHQKPHHXNPXXXXPXXNRRXXXXHPXXPQPXXXQTTSNXPXTDXPQTXTXTTXRXNPX 669
           + H KP    P    P         HP    P     T   P T  P T    +    P 
Sbjct: 89  KPHPKPPTVKPPHPKPPTK-----PHPHPKPPIVKPPTKPPPSTPKPPTKPPPSTPKPPT 143

Query: 670 XQXP 681
            + P
Sbjct: 144 TKPP 147


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 33.5 bits (73), Expect = 0.35
 Identities = 23/98 (23%), Positives = 27/98 (27%)
 Frame = +1

Query: 349 PTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPPXTQDHQKPHHXNPXX 528
           PT P     P PT + P+       P P   P           PP T     P    P  
Sbjct: 93  PTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVP-SPTPPV 151

Query: 529 XXPXXNRRXXXXHPXXPQPXXXQTTSNXPXTDXPQTXT 642
             P          P  P P     +   P +  P T T
Sbjct: 152 SPPPPTPTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPT 189



 Score = 31.1 bits (67), Expect = 1.9
 Identities = 26/102 (25%), Positives = 29/102 (28%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPPXT 489
           PTP          P+ P+  T P PT   P+       P P   P     P     PP T
Sbjct: 147 PTPPVSPPPPTPTPSVPSP-TPPVPTDPMPSPPPPVSPPPPTPTPSVPSPPDVTPTPP-T 204

Query: 490 QDHQKPHHXNPXXXXPXXNRRXXXXHPXXPQPXXXQTTSNXP 615
                P    P    P          P  P P    T S  P
Sbjct: 205 PSVPSPPDVTPTPPTPSV-PSPPDVTPTPPTPPSVPTPSGSP 245


>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains Pfam profile PF00194: Eukaryotic-type carbonic
           anhydrase
          Length = 350

 Score = 32.7 bits (71), Expect = 0.62
 Identities = 21/73 (28%), Positives = 28/73 (38%)
 Frame = +3

Query: 249 PQXPQXEHXPXPXKTNXRKXTHAPXTEXRXKSPTNPTNXRXRTXXHPXPTKXTPXXEXXX 428
           P+ P+ +  P P      K T AP T  + K    PT  + +    P P K  P      
Sbjct: 26  PKPPKPKPAPAPTPPKP-KPTPAP-TPPKPKPKPAPTPPKPKPAPAPTPPKPKPAPAPTP 83

Query: 429 PTTXPRXXTTPXN 467
           P   P+   TP N
Sbjct: 84  PKPKPKPAPTPPN 96



 Score = 32.3 bits (70), Expect = 0.81
 Identities = 18/66 (27%), Positives = 23/66 (34%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPPXT 489
           P P+  K      PT P     P PT  +P  +     P P+  P     P+    P  T
Sbjct: 24  PAPKPPKPKPAPAPTPPKPKPTPAPTPPKPKPKPAPTPPKPKPAPA-PTPPKPKPAPAPT 82

Query: 490 QDHQKP 507
               KP
Sbjct: 83  PPKPKP 88



 Score = 31.5 bits (68), Expect = 1.4
 Identities = 18/66 (27%), Positives = 21/66 (31%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPPXT 489
           P P   K   +  PT P     P PT  +P        P P+  P     P     P  T
Sbjct: 46  PAPTPPKPKPKPAPTPPKPKPAPAPTPPKPKPAPAPTPPKPKPKPA-PTPPNPKPTPAPT 104

Query: 490 QDHQKP 507
               KP
Sbjct: 105 PPKPKP 110



 Score = 29.5 bits (63), Expect = 5.7
 Identities = 16/66 (24%), Positives = 19/66 (28%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQHXPGXXQXPRTXGXPPXT 489
           P P   K      PT P     P PT  +P  +     P P+  P            P  
Sbjct: 57  PAPTPPKPKPAPAPTPPKPKPAPAPTPPKPKPKPAPTPPNPKPTPAPTPPKPKPAPAPAP 116

Query: 490 QDHQKP 507
               KP
Sbjct: 117 TPAPKP 122


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 22/105 (20%), Positives = 29/105 (27%), Gaps = 1/105 (0%)
 Frame = +1

Query: 310 PTPQXXKXXXRAQPTXPTXXTGPXPTXTQPNXRXXSKXPXPQ-HXPGXXQXPRTXGXPPX 486
           P P        + P  P   + P P    P     ++ P P  H P   Q       P  
Sbjct: 500 PPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSPPPPQFSPPPPEPYY 559

Query: 487 TQDHQKPHHXNPXXXXPXXNRRXXXXHPXXPQPXXXQTTSNXPXT 621
                 PH   P    P  +      +P    P      S+ P T
Sbjct: 560 YSSPPPPHSSPPPHSPPPPHSPPPPIYPYLSPPPPPTPVSSPPPT 604


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.303    0.120    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,663,372
Number of Sequences: 28952
Number of extensions: 154026
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3826521024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)