Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G23
         (896 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.3  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   9.9  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 25  RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVL 177
           R +L YF +++     + S A L    PP +  KLT+    +LS    L L
Sbjct: 209 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 259


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 25  RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVL 177
           R +L YF +++     + S A L    PP +  KLT+    +LS    L L
Sbjct: 209 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 259


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 25  RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVL 177
           R +L YF +++     + S A L    PP +  KLT+    +LS    L L
Sbjct: 209 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 259


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 25  RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVL 177
           R +L YF +++     + S A L    PP +  KLT+    +LS    L L
Sbjct: 209 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 259


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 25  RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVL 177
           R +L YF +++     + S A L    PP +  KLT+    +LS    L L
Sbjct: 209 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 259


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 448 NVCQSFLSDKRYVVKLKI 501
           ++CQ   S K+ +VK+KI
Sbjct: 312 DLCQEANSTKKLIVKIKI 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,044
Number of Sequences: 336
Number of extensions: 1803
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)