Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_G23
(896 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.94
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.94
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.94
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.94
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 3.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 5.0
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 8.7
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 8.7
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.94
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 25 RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSF-VFALVLALSMTSAA 201
R +L YF +++ + S A L PP + KLT+ +LS VF ++A SM + +
Sbjct: 192 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTS 251
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.94
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 25 RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSF-VFALVLALSMTSAA 201
R +L YF +++ + S A L PP + KLT+ +LS VF ++A SM + +
Sbjct: 192 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTS 251
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.94
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 25 RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSF-VFALVLALSMTSAA 201
R +L YF +++ + S A L PP + KLT+ +LS VF ++A SM + +
Sbjct: 192 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTS 251
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.94
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 25 RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSF-VFALVLALSMTSAA 201
R +L YF +++ + S A L PP + KLT+ +LS VF ++A SM + +
Sbjct: 260 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTS 319
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 3.8
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 25 RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSF-VFALVLALSMTSAA 201
R +L YF +++ + S A L PP + KL++ +LS VF ++A +M + +
Sbjct: 229 RRTLYYFFNLIVPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATS 288
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 25 RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVL 177
R +L YF +++ + S A L PP + KLT+ +LS L L
Sbjct: 192 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 25 RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVL 177
R +L YF +++ + S A L PP + KLT+ +LS L L
Sbjct: 192 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 25 RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVL 177
R +L YF +++ + S A L PP + KLT+ +LS L L
Sbjct: 192 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 5.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 25 RESLRYFLDILDSAHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVL 177
R +L YF +++ + S A L PP + KLT+ +LS L L
Sbjct: 260 RRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 310
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 61 SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 153
SA ++ T P PP+NL ++ ++IL
Sbjct: 994 SAELIVRTEPQRPAGPPINLEARALSSSEIL 1024
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 61 SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 153
SA ++ T P PP+NL ++ ++IL
Sbjct: 990 SAELIVRTEPQRPAGPPINLEARALSSSEIL 1020
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,432
Number of Sequences: 438
Number of extensions: 2259
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -