Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G22
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    36   0.050
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    36   0.050
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    30   1.9  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    30   1.9  
U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of s...    30   2.5  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    29   4.4  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 177 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 356
           VK D   +  C + C    + P+CA   GE   +F NEC M   +CE K  ++   QG C
Sbjct: 383 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 437


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 177 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 356
           VK D   +  C + C    + P+CA   GE   +F NEC M   +CE K  ++   QG C
Sbjct: 391 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 445


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 252 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQCPGSDGIRLS 383
           G TG K +   NEC+ NN  CEH + +  I    C    G  LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 252 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQCPGSDGIRLS 383
           G TG K +   NEC+ NN  CEH + +  I    C    G  LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149


>U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform a
           protein.
          Length = 135

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 177 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQGQC 356
           + A A   K C  +    +    C  + G  PK+   +C+MN   C+ KD   + S G+C
Sbjct: 10  IVAVATATKTCEANEELVSCHNTCEPQCGYTPKACTEQCIMN--TCDCKDGFVRNSLGKC 67


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 201 KACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCE 317
           K C H+CT    DP+C          + N CV     CE
Sbjct: 113 KDCNHNCTNTEFDPVC----DTNGSVYRNLCVFQMRRCE 147


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 222 CSHACRPSCAQHQPSPASGPAC 157
           C  AC PSC Q   +PA  P C
Sbjct: 178 CMPACLPSCVQSSCAPACQPMC 199



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 222 CSHACRPSCAQHQPSPASGPAC 157
           C  +C+PSC Q   +PA  P C
Sbjct: 225 CMPSCQPSCVQQACAPACQPMC 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,676,374
Number of Sequences: 27780
Number of extensions: 280359
Number of successful extensions: 793
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)