Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G21
         (869 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    27   0.15 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   9.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.5  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = -2

Query: 346 QFINSASHFINSIYDLIRHTLKFILHVL*K*LYVLCHFLHIFWIAGWC*VFIFCVFNNIV 167
           +F     +FI +IY L   T    LHV     Y+   F HIF+    C  FI  +  NIV
Sbjct: 36  KFCRILKYFIIAIYVLTILTSSVTLHVCFN-SYMYA-FTHIFFFFAICCDFIALIVVNIV 93

Query: 166 RV 161
            V
Sbjct: 94  HV 95



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 409 FIYQFALEYHPKIIYAWINNKYK*FCRYLKLF 504
           F++    + + KI +     KY+ FCR LK F
Sbjct: 16  FLFLLICDSYLKIYH---KEKYRKFCRILKYF 44


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 578 FVWGNCNFRFSEYLDFLIYVICCE 507
           F+  NC     EYL+F+  V+  E
Sbjct: 358 FIMDNCEELIPEYLNFIKGVVDSE 381


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 672 LLTLAYKYNIPMKTLK*FNLIYLFQILWM 586
           ++ +AYK++  M  L+   L+  F  +W+
Sbjct: 471 MICVAYKFDAAMMALRTSFLVNDFGFIWL 499


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,865
Number of Sequences: 336
Number of extensions: 3875
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)