Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G21
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    33   0.22 
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    29   4.8  
09_04_0338 - 16801189-16801524,16801605-16801679,16801758-168018...    28   8.5  
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300...    28   8.5  

>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 314 IDEMGSRVDELEKNITDLMTQAGVE 388
           +DEMG+++DELE+++ DL  + G +
Sbjct: 594 LDEMGTKIDELEQSVNDLKAEMGTD 618


>01_06_0124 -
           26692731-26697046,26698749-26698827,26698899-26698955,
           26699321-26699416
          Length = 1515

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 20/75 (26%), Positives = 39/75 (52%)
 Frame = +2

Query: 167 DNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDEL 346
           +N+  + E E    +   KN +++ + V S LQN     Q   ++ +    E+G++++E 
Sbjct: 484 ENLGNDLEQELERISIMHKNNEDL-ELVNSNLQNDLATVQGQKNEAVASTLELGNKLEEK 542

Query: 347 EKNITDLMTQAGVEN 391
            + I++L  Q  VEN
Sbjct: 543 NQQISNL--QEAVEN 555



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/74 (25%), Positives = 38/74 (51%)
 Frame = +2

Query: 170 NIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELE 349
           N+  + E ++   +   KN +E+ +   S LQN     Q   ++ +    E+G++++E  
Sbjct: 744 NLGNDLEQKFEQISVMQKNNEEL-ELANSNLQNELAMVQEQKNEAVASTVELGNKLEEQN 802

Query: 350 KNITDLMTQAGVEN 391
           + I++L  Q  VEN
Sbjct: 803 QQISNL--QEAVEN 814


>09_04_0338 -
           16801189-16801524,16801605-16801679,16801758-16801831,
           16801972-16802059,16802185-16802336,16802423-16802582,
           16802913-16803128,16803487-16803744,16804202-16804231,
           16804738-16804941,16805790-16805855
          Length = 552

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 206 PASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEK 352
           P+     +++ T    S L+ + +   ++  +  +RID+MG+ V+ L K
Sbjct: 220 PSLHQNGLEQSTNISNSTLEGLANTISNLKAEQRSRIDKMGAEVERLTK 268


>06_01_0421 -
           3000486-3000595,3000909-3001148,3001659-3001722,
           3001969-3002274,3002365-3002579,3003047-3003341,
           3003487-3003651,3003745-3004341,3004855-3004941,
           3005022-3005342,3006218-3008242
          Length = 1474

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
 Frame = +1

Query: 637 HWYIVFIS*SQQFS---TTFNF---PTFNQQPSVQFYDLQL-------CCCSVYXQYGDL 777
           HW++V ++  Q FS   T+F+F   P F     V+F+ L L       CCCSV    G+ 
Sbjct: 107 HWWLVILA--QGFSLILTSFSFSIRPRFLGATFVRFWSLLLTICAAFICCCSVVYMVGEK 164

Query: 778 RKTL 789
             T+
Sbjct: 165 EITI 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,093,775
Number of Sequences: 37544
Number of extensions: 324860
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)