Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G21
         (869 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15802.1 68417.m02405 expressed protein contains non-consensu...    46   2e-05
At4g15233.1 68417.m02334 ABC transporter family protein similar ...    29   3.1  
At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal ...    29   4.0  
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida...    29   4.0  
At5g37120.1 68418.m04455 hypothetical protein hypothetical prote...    29   5.3  
At3g52450.1 68416.m05768 U-box domain-containing protein similar...    28   9.3  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    28   9.3  

>At4g15802.1 68417.m02405 expressed protein contains non-consensus
           AT-AC splice sites at intron 4
          Length = 50

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 28/34 (82%)
 Frame = +2

Query: 233 EVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSR 334
           ++T +VQ+LLQ MQ +FQ+MSD II +ID+MG +
Sbjct: 15  DMTAFVQNLLQQMQTRFQTMSDSIITKIDDMGGQ 48


>At4g15233.1 68417.m02334 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1168

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +2

Query: 245 YVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQAGVE 388
           ++  L++++++    +  +I  RIDE+G  + ++E   +DL  +A  E
Sbjct: 74  FIDDLIRHVENDNHVLLQKIRKRIDEVGIDLPKIEARFSDLFVEAECE 121


>At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 299

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +2

Query: 143 FNMAXPNPDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDE 322
           F+   PN D+++    N    P     NMQ       S++Q++ +       Q++++++ 
Sbjct: 60  FSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHL----TQVLSQLET 115

Query: 323 MGSRVDELEK 352
              + DEL+K
Sbjct: 116 EKKKYDELKK 125


>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
           putative / ACC oxidase, putative nearly identical to ACC
           oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
          Length = 320

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 233 EVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQ 376
           E T YV+ L Q+  +    +SD+    + + G R++ L +++ DL+ +
Sbjct: 90  ESTFYVRHLPQSNLNDISDVSDEYRTAMKDFGKRLENLAEDLLDLLCE 137


>At5g37120.1 68418.m04455 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 98

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 260 LQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQAGVENEK 397
           L+N    F+ + + +IN I+ + +R  E+EK + +L T+  +E EK
Sbjct: 3   LRNNNHIFKWVDEALINEIETLTARHGEIEKELKELRTER-LEFEK 47


>At3g52450.1 68416.m05768 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 435

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +2

Query: 170 NIVKNTENEYSTPAS--DPKNMQEVTQYVQSLLQNMQDKFQSMSDQIIN 310
           NIV N+ + Y++P+S     N+ ++ Q   ++L+N  D  +S+ D+ ++
Sbjct: 144 NIVSNSVDTYNSPSSSLSSSNLNDMCQ--SNMLENRFDSSRSLMDEALS 190


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
            protein contains Pfam profile: PF00149 calcineurin-like
            phosphoesterase
          Length = 1338

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +2

Query: 164  PDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDE 343
            P N+V N  N   +P+S P +   +   + S  +N++ K   +S+Q+   +DE      +
Sbjct: 977  PSNLVHNITNSVDSPSSVPDDKDNL---ISS--ENVEYKSMDLSEQM--EVDEKDDVDSK 1029

Query: 344  LEKNITDLMTQAG 382
              ++ITD +   G
Sbjct: 1030 YSESITDEVAAFG 1042


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,624,094
Number of Sequences: 28952
Number of extensions: 299743
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)