Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G20
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   8.1  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -2

Query: 488 DCLVNSITMSPTICKSAFVFSSTVLALVSIWKSDICWFFRPVMFKFLKRITTPASFGA 315
           + L N + + P +  S    SSTVL   + W + I  F   +    L  + T A+FGA
Sbjct: 351 ELLFNPMELFPQVINSCSPSSSTVLCETTFWVTAIVLFTSAL----LGLLLTSATFGA 404


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 457 GDIVIELTKQSKSFTGLYTADTNVIGAVRYGYNLKND 567
           G IVI L    +S   L+  D   I  + YG  +  D
Sbjct: 139 GSIVINLRDSGESLPPLFFHDDECISTIEYGKQITRD 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,662
Number of Sequences: 5004
Number of extensions: 53612
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)