Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G20
         (879 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)               29   6.6  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)                   28   8.7  

>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
          Length = 684

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 264 IRHMAYRSTSCDVIGCXCSKRCGSRDTLQKFKHHGSKE 377
           IR +      C  +   CS  CG+R   ++   H SK+
Sbjct: 134 IRSLVGHLAECKFVSADCSNSCGARIQKRRMSEHTSKD 171


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 371  RPVMFKFLKRITTPASFGAXTSNDVTTSGSIGHMSY 264
            +P +     R +TP S G+  S  VTTS ++G +SY
Sbjct: 1928 QPFLLDDSNRNSTPLSRGSNNSFIVTTSEALGQLSY 1963


>SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)
          Length = 1252

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 285 IDRPYVVLWYPFTGFLQKLLCRTAKALHVTKFAGF*KSISIGSH 154
           I+R +VV W+   G  +  +  T KAL +    G+ ++  + +H
Sbjct: 308 INRDFVVSWFRDVGEGEGFVGETRKALEILSLEGYKRACDVDAH 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,064,625
Number of Sequences: 59808
Number of extensions: 400282
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)