Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G20
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    29   4.4  
Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
            class iii (c) protein1 protein.
          Length = 1400

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 452  ICKSAFVFSSTVLALVSIWKSDICWFFRPVMFKFLKRITTP-ASFGAXTSNDV 297
            ICK+   + +++LA   + K+ +C F     +K  + IT P  + GA  +  +
Sbjct: 1002 ICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVGAIAATSI 1054


>Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical
           protein JC8.5 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 519 IGRVKSCEGLRLFSQLDYDVPNNM*IGFRLQQHRL 415
           I  +K CE   +  Q + DVP++M   F+ QQH +
Sbjct: 105 IANMKKCEDRLIRVQFNSDVPSSMRWEFKPQQHEI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,643,434
Number of Sequences: 27780
Number of extensions: 302414
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)