Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G20
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    37   2e-04
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   2.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +1

Query: 205 QCLSSATXQFLEKTSKGIPQYDIWPIDPLVVTSLDVFAPNDAGVVIR--FKNLNITGL-K 375
           QC++ A    +   + G+  + I PI+PL V S+ +   +   V +R  +KN+ + GL K
Sbjct: 42  QCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKI-GESQGSVTLRQEYKNIKLYGLTK 100

Query: 376 NQQISDFQM 402
           N +I ++ +
Sbjct: 101 NLEIKNYNI 109


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = -2

Query: 419 VLALVSIWKSDICWFFRPVM---FKFL-KRITTPASFGAXT-SNDVTT-SGSIGHMSYCG 258
           +L +V IW   I W   PVM    +F+ +   T  SF   T +N++     +I   SYC 
Sbjct: 163 ILFIVLIWTYTIPWALMPVMGVWGRFVPEGFLTSCSFDYLTDTNEIRIFVATIFTFSYC- 221

Query: 257 IPLLV 243
           IP+++
Sbjct: 222 IPMIL 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,218
Number of Sequences: 438
Number of extensions: 3488
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)