Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_G17
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0206 + 41990251-41992032,41992131-41992361 31 0.96
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 30 2.9
03_05_0558 - 25606718-25606724,25606918-25606995,25608552-256086... 30 2.9
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 5.1
01_03_0237 + 14068713-14069315,14069654-14069914 29 5.1
08_01_1058 + 10765837-10766325 28 8.9
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 8.9
04_04_1179 - 31512592-31515126 28 8.9
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105... 28 8.9
>01_07_0206 + 41990251-41992032,41992131-41992361
Length = 670
Score = 31.5 bits (68), Expect = 0.96
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 165 YWEDEEGYPVSGQFSKRHPRDVTWDKQVGG-----GKVFGTLGQNDDGLFGKAGYNREIF 329
Y D EG P+ S+R R W++Q+GG +++G D L +NR+
Sbjct: 216 YQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKD--LLTLYNFNRQYV 273
Query: 330 NDDRGKLTGQA 362
N D+ L+ QA
Sbjct: 274 NMDKTWLSKQA 284
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 29.9 bits (64), Expect = 2.9
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Frame = +3
Query: 249 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTR--VLGPAGDSTNYGGRLD 422
GGG G G +G GY + RG + G + G R V G GD NYGG
Sbjct: 149 GGGGYSGQGTYGGGGGYGGGGYGGQDAYGGRG-VGGYSEGGRGYVGGGYGDGNNYGGYNT 207
Query: 423 WANKNAEAAIDINRQIGGRSGMTATGSG 506
N+E G G + G+G
Sbjct: 208 SGGYNSEGGRGGYSVFEGGHGYGSGGTG 235
>03_05_0558 -
25606718-25606724,25606918-25606995,25608552-25608665,
25608755-25609266
Length = 236
Score = 29.9 bits (64), Expect = 2.9
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -3
Query: 609 DGTLP-GRRRL-VFCDRIPSRPYRRLRGGCSCQDPTXXXXXXSFQICLRSVYLYQ*QLPH 436
DG P G +RL VF D P R L G C+C D Q+C R + + +
Sbjct: 127 DGERPFGSQRLRVFIDSAPGR----LIGICACNDEKLGHSGYLLQLCGR-LGVLDGNWEY 181
Query: 435 SYWPSLDVHRSLYC 394
+Y LDV + YC
Sbjct: 182 NYVALLDVPKQNYC 195
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 512 GS*QEHPPLSRRYGLEGIRSQKTRRRRPGRVP 607
GS Q + L RRYG + + T +++PG VP
Sbjct: 322 GSLQYYQRLGRRYGNKSLEVNATSQKKPGVVP 353
>01_03_0237 + 14068713-14069315,14069654-14069914
Length = 287
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 220 RVTSPGTNKWGEGRSSARWAKMMMGFLVKPVTTERSSMMTAAN*PGRPTAPGSW 381
R PGT + G + WA+ + ++ E + T + GR T+PG W
Sbjct: 166 RRLGPGTQRGGCRAEGSTWARGLASPGLQLKKRELEARRTESEKSGRDTSPGEW 219
>08_01_1058 + 10765837-10766325
Length = 162
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 491 SNRLRSVGS*QEHPPLSRRY-GLEGIRSQKTRRRR-PGRVPS*LVIKKIP---SRHHR 649
SN RS+ S PP ++R L S + RRRR PG +V+ +P S+HHR
Sbjct: 18 SNAARSILSASAAPPPAKRAPSLPAAPSAQCRRRRPPGSAVIIVVLTALPSSSSQHHR 75
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 396 STNYGGRLDWANKNAEAAIDINRQI 470
S+ +GG L W N + E+ +D +RQ+
Sbjct: 960 SSLHGGSLPWKNTDFESTVDFDRQL 984
>04_04_1179 - 31512592-31515126
Length = 844
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 200 TANWISFFVLPINFCVDTH 144
TA+W +F VLP N+C+ H
Sbjct: 86 TASWYNFSVLPGNYCLRLH 104
>02_01_0148 -
1051121-1051192,1051378-1051512,1052343-1052396,
1052501-1052581,1052667-1052826,1053346-1053453,
1053543-1053718,1053952-1054002,1054154-1054264,
1054493-1054547,1055667-1055789,1055922-1056007,
1056235-1056349,1056429-1056667
Length = 521
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 197 ANWISFFVLPINFCVDTHQDRGEEI 123
A W F LP + +D H DR E++
Sbjct: 69 ALWAHFHRLPARYALDVHADRAEDV 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,395,994
Number of Sequences: 37544
Number of extensions: 494240
Number of successful extensions: 1356
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -