Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G17
         (908 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.10 
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.97 
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            31   1.7  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   28   9.1  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 33/109 (30%), Positives = 43/109 (39%)
 Frame = +3

Query: 243 QVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPAGDSTNYGGRLD 422
           Q G G  FGT      GLFG AG N        G +TG  +G      +  ST +GG   
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFGS 104

Query: 423 WANKNAEAAIDINRQIGGRSGMTATGSGVWDLDKNTRLSAGGMVSKEFG 569
            A  N       N    G    T TG+G++   +    + GG  +  FG
Sbjct: 105 TAGTNTGGLFG-NTAASG----TTTGTGLFGQTQGA--AFGGTSTSGFG 146


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +2

Query: 521 QEHPPLSRRYGLEGIRSQKTRRRRPGRVPS*LVIKKIPSRHHRS 652
           + H P   R      RS+  RRRR  R P      + PS HHRS
Sbjct: 212 RSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRS 255


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -2

Query: 601 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 422
           S + P+SG+  P      PP+   VF S S  P PV   P  PP  +F   A S+ +   
Sbjct: 424 SVFAPSSGV--PTPVAAPPPS---VFASSSGVPTPVTAPPPAPPPSVF---APSSGVPTP 475

Query: 421 SRRPP*FVLSPA 386
              PP  V +P+
Sbjct: 476 VAAPPPSVFAPS 487



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 24/72 (33%), Positives = 34/72 (47%)
 Frame = -2

Query: 601 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 422
           S +  +SG+  P   +  PP+   VF S S  P PVA  P  PP  +F   A S+ +   
Sbjct: 366 SVFASSSGV--PTPVKAPPPS---VFASSSGVPTPVAAPPPAPPPSVF---APSSGVPTP 417

Query: 421 SRRPP*FVLSPA 386
              PP  V +P+
Sbjct: 418 VAAPPPSVFAPS 429



 Score = 28.7 bits (61), Expect = 6.9
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -2

Query: 601 SAWTPTSGLL*PNSFETIPPAER-RVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLA 425
           S + P+SG+  P      PPA    VF   S  P PV   P  PP  +F   A S+ +  
Sbjct: 522 SVFAPSSGV--PTPVTEPPPAPPPSVFAPSSGVPTPVTAPPPAPPPSVF---APSSAVPT 576

Query: 424 QSRRPP*FVLSPAGPRTL 371
            +  PP    + + P  L
Sbjct: 577 PATAPPPVAATLSAPPPL 594


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 488  DSNRLRSVGS*QEHPPLSRRYGLEGIRSQKTRRRRPGRVPS 610
            D+ +LR V    E PPL  RYG  G+  +K R R PG+ P+
Sbjct: 2322 DAIKLRRVPLKAEKPPLRGRYG--GVHRRK-RGRPPGQGPT 2359


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +3

Query: 195 SGQFSKRHPRDVTWDKQVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTR 374
           S   S+  P+  +W ++     VF       D  F + G+ R+  ++ RG+    A  T 
Sbjct: 692 SSSTSESSPKRFSWSQENSKDVVFAGPDLPADNPFNREGFGRQSMSEKRGRAAVDAKKTE 751

Query: 375 V 377
           V
Sbjct: 752 V 752


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,858,833
Number of Sequences: 59808
Number of extensions: 537477
Number of successful extensions: 1151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)