Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G17
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   4.6  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 492 ATGSGVWDLDKNTRLSAGGMVSKEFGHRRPDVGVQAEFRHDW*SRRSHQDIIDLNNNLLP 671
           A G+G+ +L K+        + + F     DV V ++ R +W  + +    +DL +N  P
Sbjct: 2   AHGNGIAELYKSVMADVIANMKEAFLDENIDVDVLSQLRKEWEDKVNSSGCVDLESNAPP 61


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 214  DTRVTSPGTNKWGEGRSSARWAKMMMGFLVKP 309
            +TR  + GTNK  +GR+  R   M +G ++KP
Sbjct: 3195 ETRTRNKGTNKRRDGRNDGR--NMNLGSIIKP 3224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,480,851
Number of Sequences: 27780
Number of extensions: 390474
Number of successful extensions: 908
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)