Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G17
         (908 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g32150.1 68416.m04094 hypothetical protein                          29   4.3  
At4g15150.1 68417.m02326 glycine-rich protein                          29   5.6  
At5g25320.1 68418.m03004 ACT domain-containing protein contains ...    28   7.4  
At3g49320.1 68416.m05392 expressed protein contains Pfam profile...    28   9.8  

>At3g32150.1 68416.m04094 hypothetical protein
          Length = 241

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 544 PAERRVFLSRSHTPEPVAVIPDLPP 470
           P E  + ++   TPEPV + P++PP
Sbjct: 162 PVEPEISVTSVETPEPVVIPPEVPP 186


>At4g15150.1 68417.m02326 glycine-rich protein 
          Length = 102

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 459 NRQIGGRSGMTATGSGVWDLDKNTRLSAGGMVSKEFG 569
           N  +GGR  +T TG GV  +    +    G+  K FG
Sbjct: 64  NSGVGGRGRLTGTGFGVTGIGLGRKAFGEGLKGKTFG 100


>At5g25320.1 68418.m03004 ACT domain-containing protein contains
           Pfam ACT domain PF01842
          Length = 500

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 329 EDLSVVTGFTKKPIIILAQRAEDLPSPHLFVPGDVTRVSL*KLTANWI 186
           ED  + T  + +P    +   +  P PH F  GD+ R  + +L+ N++
Sbjct: 450 EDTKIDTVGSDEPTASASATPQRQPQPHRFSLGDILRSQMERLSLNFV 497


>At3g49320.1 68416.m05392 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 354

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 501 SGVWDLDKNTRLSAGGMVSKEFGHRRPDVGVQAEFRH 611
           S V+ L  NT+LS+ G+V K +G       +Q E RH
Sbjct: 100 SEVFGLGFNTKLSSAGLVYKHYGLEIISKELQLEQRH 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,615,078
Number of Sequences: 28952
Number of extensions: 370383
Number of successful extensions: 860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)