Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G15
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   6.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   6.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   6.1  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    26   8.1  

>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 855 DPRXRWKDVVXKDKRECNVADEDVEDRAKWRK 760
           + +  WK    +DK E   A E  ED+A+W+K
Sbjct: 149 EDKAEWKKAREEDKAEWKKARE--EDKAEWKK 178


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 334  QWDLLKKLE*NVTIGLSLETDHSFMHRI 417
            +W  L ++  N T GL +ET H F+ R+
Sbjct: 1064 KWQELLQIRDNPTHGLLVETKHPFIKRV 1091


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 334  QWDLLKKLE*NVTIGLSLETDHSFMHRI 417
            +W  L ++  N T GL +ET H F+ R+
Sbjct: 1064 KWQELLQIRDNPTHGLLVETKHPFIKRV 1091


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 91  THKIKQKLTWLT*VKANVVSSLYICYH*KWRKSSVRFLVY 210
           THK+++  +W T    N++  +++     +   S R+L+Y
Sbjct: 169 THKLRKTASWRTSFGINILWGIFLMVGVLFLPESPRYLIY 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,083
Number of Sequences: 5004
Number of extensions: 58303
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)