Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G15
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.70 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 112 LTWLT*VKANVVSSLYICYH*KWRKSSVRFLVYC 213
           +TWL  + + +   +Y C+   +R++ VR L  C
Sbjct: 375 VTWLGWINSGMNPVIYACWSRDFRRAFVRILCAC 408


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 712 SYVSHLVVVSAFLTLLLPPLRSVFDILISNIAFPFVL 822
           S +  LVV    ++ +LPP   V  ++   + F F++
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIM 306


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 723 PLGGGVSFPYFTPSSTS 773
           P+G G SFP   P +T+
Sbjct: 385 PIGSGGSFPSLYPMATT 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,357
Number of Sequences: 438
Number of extensions: 4627
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)