Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G14
         (912 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   3.9  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           25   9.2  

>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +1

Query: 499 PXPXXXGGGXXXPXXPPXPXXXXXXXXXXXGXXXXXXPPPPPP 627
           P P    GG   P  PP P           G      PPPPPP
Sbjct: 666 PPPGGQAGGAPPPPPPPLPGGAAPPPPPPIG---GGAPPPPPP 705


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 24.6 bits (51), Expect(2) = 9.2
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 610 PPPPPPXXXXXXXXXXXXPPXXXXXXXXKKK 702
           PPPPPP            PP        KKK
Sbjct: 663 PPPPPPPPGGGVPGPPKPPPPGNLSTLNKKK 693



 Score = 21.8 bits (44), Expect(2) = 9.2
 Identities = 9/27 (33%), Positives = 9/27 (33%)
 Frame = +1

Query: 544 PPXPXXXXXXXXXXXGXXXXXXPPPPP 624
           PP P           G      PPPPP
Sbjct: 644 PPNPFFGGIPPPPPGGGMFPPPPPPPP 670


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,380
Number of Sequences: 59808
Number of extensions: 175842
Number of successful extensions: 725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)