Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G14
         (912 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50180.1 68416.m05486 hypothetical protein                          24   3.8  
At1g61080.1 68414.m06877 proline-rich family protein                   25   6.1  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    28   7.5  

>At3g50180.1 68416.m05486 hypothetical protein
          Length = 588

 Score = 24.2 bits (50), Expect(2) = 3.8
 Identities = 11/40 (27%), Positives = 13/40 (32%)
 Frame = +1

Query: 610 PPPPPPXXXXXXXXXXXXPPXXXXXXXXKKKXXXXPXXXP 729
           PPPPPP            PP        K++    P   P
Sbjct: 37  PPPPPPRLGPRLRLRLLPPPRQQLLRLRKQQPLVLPEPLP 76



 Score = 23.4 bits (48), Expect(2) = 3.8
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +1

Query: 535 PXXPPXPXXXXXXXXXXXGXXXXXXPPPPPP 627
           P  PP P                  PPPPPP
Sbjct: 8   PPPPPLPPRLELRRQRAPPPQPPPPPPPPPP 38


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 25.0 bits (52), Expect(2) = 6.1
 Identities = 12/43 (27%), Positives = 12/43 (27%)
 Frame = +1

Query: 499 PXPXXXGGGXXXPXXPPXPXXXXXXXXXXXGXXXXXXPPPPPP 627
           P P         P  PP             G      PPPPPP
Sbjct: 527 PPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPP 569



 Score = 21.8 bits (44), Expect(2) = 6.1
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +1

Query: 610 PPPPPPXXXXXXXXXXXXPP 669
           PPPPPP            PP
Sbjct: 606 PPPPPPMAMANGAAGPPPPP 625


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +1

Query: 184 PGXXGFXPPXQXXIFXXPXKXXGFFFXPPXXYXPPXXIFXQSXPXXPPPFXXKKXTPFF 360
           P    + PP +  +   P         PP  + PP  I+  S P  PPP   K  TP +
Sbjct: 175 PPTPTYSPPIKPPVHKPPTPIYSPPIKPPPVHKPPTPIY--SPPIKPPP-VHKPPTPTY 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,028,818
Number of Sequences: 28952
Number of extensions: 200725
Number of successful extensions: 1298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)