Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G11
         (895 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal prot...   194   1e-49
X13625-1|CAB38441.1|  114|Drosophila melanogaster protein ( Dros...   194   1e-49
AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p pro...   194   1e-49
AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-P...   194   1e-49
AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-P...   194   1e-49
AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-P...   194   1e-49
AY051994-1|AAK93418.1|  736|Drosophila melanogaster LD46233p pro...    29   6.5  
AE014134-1945|AAF53004.2|  736|Drosophila melanogaster CG12299-P...    29   6.5  

>X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal protein
           S31 protein.
          Length = 114

 Score =  194 bits (473), Expect = 1e-49
 Identities = 88/108 (81%), Positives = 97/108 (89%)
 Frame = +2

Query: 92  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 271
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 272 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKXDRRIRTPPKSNFPRDMSR 415
            + LPKLYAKLHYCVSCAIHSKVVRNRS+  RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>X13625-1|CAB38441.1|  114|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for putative ribosomal
           protein S31. ).
          Length = 114

 Score =  194 bits (473), Expect = 1e-49
 Identities = 88/108 (81%), Positives = 97/108 (89%)
 Frame = +2

Query: 92  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 271
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 272 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKXDRRIRTPPKSNFPRDMSR 415
            + LPKLYAKLHYCVSCAIHSKVVRNRS+  RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p
           protein.
          Length = 114

 Score =  194 bits (473), Expect = 1e-49
 Identities = 88/108 (81%), Positives = 97/108 (89%)
 Frame = +2

Query: 92  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 271
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 272 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKXDRRIRTPPKSNFPRDMSR 415
            + LPKLYAKLHYCVSCAIHSKVVRNRS+  RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-PC,
           isoform C protein.
          Length = 114

 Score =  194 bits (473), Expect = 1e-49
 Identities = 88/108 (81%), Positives = 97/108 (89%)
 Frame = +2

Query: 92  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 271
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 272 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKXDRRIRTPPKSNFPRDMSR 415
            + LPKLYAKLHYCVSCAIHSKVVRNRS+  RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-PB,
           isoform B protein.
          Length = 114

 Score =  194 bits (473), Expect = 1e-49
 Identities = 88/108 (81%), Positives = 97/108 (89%)
 Frame = +2

Query: 92  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 271
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 272 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKXDRRIRTPPKSNFPRDMSR 415
            + LPKLYAKLHYCVSCAIHSKVVRNRS+  RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-PA,
           isoform A protein.
          Length = 114

 Score =  194 bits (473), Expect = 1e-49
 Identities = 88/108 (81%), Positives = 97/108 (89%)
 Frame = +2

Query: 92  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 271
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 272 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKXDRRIRTPPKSNFPRDMSR 415
            + LPKLYAKLHYCVSCAIHSKVVRNRS+  RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AY051994-1|AAK93418.1|  736|Drosophila melanogaster LD46233p
           protein.
          Length = 736

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = +2

Query: 53  PAVLCSPGSEVRNMTRKRRNGGRAKHG--------RGHVKAVRCTNCARCVPKDKAIKKF 208
           PA   SPG  +++   KRR G R+  G         G+ K  +CT+C    P    + K 
Sbjct: 213 PAPTVSPGLGLQSTPIKRRRGRRSNIGAPVMDPALNGNQKCFQCTHCEASFPNAGDLSKH 272

Query: 209 VIRNI 223
           V  +I
Sbjct: 273 VRSHI 277


>AE014134-1945|AAF53004.2|  736|Drosophila melanogaster CG12299-PA
           protein.
          Length = 736

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = +2

Query: 53  PAVLCSPGSEVRNMTRKRRNGGRAKHG--------RGHVKAVRCTNCARCVPKDKAIKKF 208
           PA   SPG  +++   KRR G R+  G         G+ K  +CT+C    P    + K 
Sbjct: 213 PAPTVSPGLGLQSTPIKRRRGRRSNIGAPVMDPALNGNQKCFQCTHCEASFPNAGDLSKH 272

Query: 209 VIRNI 223
           V  +I
Sbjct: 273 VRSHI 277


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,662,115
Number of Sequences: 53049
Number of extensions: 462595
Number of successful extensions: 967
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4341591036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)