Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G11
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   160   1e-39
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    29   4.5  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC006729-10|AAL32234.1|  487|Caenorhabditis elegans Hypothetical...    29   5.9  
AC006729-9|AAF60470.1|  670|Caenorhabditis elegans Hypothetical ...    29   5.9  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  160 bits (389), Expect = 1e-39
 Identities = 73/98 (74%), Positives = 79/98 (80%)
 Frame = +2

Query: 92  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 271
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 272 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKXDRRIRTPP 385
            + LPKLY KLHYC++CAIHSKVVRNRS+  RR R PP
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 140 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 310
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H  Y
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 311 C 313
           C
Sbjct: 140 C 140


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 140 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 310
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H  Y
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 311 C 313
           C
Sbjct: 258 C 258


>AC006729-10|AAL32234.1|  487|Caenorhabditis elegans Hypothetical
           protein Y24D9A.1b protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 175 PRAV-CASHSFNVTTSMLGASSITALTSHVSNLRSG*TKNGGKKA 44
           PR++  A +S  V+ S + +SS  A TSHV+   S  T N G ++
Sbjct: 210 PRSMNSAPNSSRVSPSFMSSSSSKASTSHVTTNNSKGTPNNGSES 254


>AC006729-9|AAF60470.1|  670|Caenorhabditis elegans Hypothetical
           protein Y24D9A.1a protein.
          Length = 670

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 175 PRAV-CASHSFNVTTSMLGASSITALTSHVSNLRSG*TKNGGKKA 44
           PR++  A +S  V+ S + +SS  A TSHV+   S  T N G ++
Sbjct: 210 PRSMNSAPNSSRVSPSFMSSSSSKASTSHVTTNNSKGTPNNGSES 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,171
Number of Sequences: 27780
Number of extensions: 213622
Number of successful extensions: 441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)