Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G09
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    29   0.64 
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.5  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    27   4.5  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 727 QVLLQVKXNTQCMYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 578
           ++LL       C  ++  L+LN+ +    L  +R +    ++  SGICGC
Sbjct: 93  KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 412 FPLHTSLFLFCGITVLRXIVAFFGITIFS 326
           FP+   +F FC    +  IV+  G+TIF+
Sbjct: 398 FPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 651 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 544
           RA P ++ G     N  + + Y D     MGIDAL+
Sbjct: 36  RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,235
Number of Sequences: 5004
Number of extensions: 32501
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)