Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G09
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              30   2.1  
SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)                    29   4.9  
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)        28   8.5  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  

>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 329 ENGDAEESXDASENGDATEKKETG 400
           E G A E+ +ASE G+A+E  ETG
Sbjct: 40  EAGKASEAGEASETGEASEASETG 63



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 317 DSPAENGDAEESXDASENGDATEKKETGVKRKS 415
           ++  E G+A E+ +ASE  +A E  ETG   K+
Sbjct: 64  EATGEAGEASETGEASEASEAGEASETGEAGKA 96


>SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)
          Length = 465

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 308 PQXDSPAENGDAEESXDASENGD 376
           P    PAENG   E  D  ENGD
Sbjct: 440 PSKPMPAENGHVSEVADTKENGD 462


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 326 AENGDAEESXDASENGDATEKKETGVKRKSV 418
           +E G+A E+ +ASE G+A++  E G   ++V
Sbjct: 471 SEAGEASEAGEASEAGEASKASEAGEASEAV 501


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 326 AENGDAEESXDASENGDATEKKETG 400
           +E G+A E+ +ASE G+A+E  E G
Sbjct: 52  SEAGEASEAGEASEAGEASEAGEAG 76



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 326 AENGDAEESXDASENGDATEKKETG 400
           +E G+A E+ +ASE G+A+E  E G
Sbjct: 202 SEAGEASEAGEASEAGEASEAGEAG 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,236,662
Number of Sequences: 59808
Number of extensions: 237657
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)