Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_G09
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    31   0.75 
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ...    31   0.99 
At1g44780.1 68414.m05130 expressed protein ; expression supporte...    31   0.99 
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot...    30   1.7  
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    29   5.3  
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ...    28   9.2  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 305 KPQXDSPAENGDAEESXDASENGDATEKKETGVKRK 412
           K    +PA+N D+EE  D S+  D  E KE  VK+K
Sbjct: 248 KKVKSTPAKNSDSEEMFD-SDGEDEEEDKEVAVKKK 282


>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           SP|P19684 33 kDa ribonucleoprotein, chloroplast
           precursor {Nicotiana sylvestris}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 308

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 320 SPAENGDAEESXDASENGDATEKKET 397
           S +E+GD+ E+ +ASE+GD  E K T
Sbjct: 276 SESEDGDSVEANNASEDGDTVEDKNT 301


>At1g44780.1 68414.m05130 expressed protein ; expression supported
           by MPSS
          Length = 471

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 287 KXMVPMKPQXDSPAENGDAEESXDASENGDATEKKETGVKRKSVAL 424
           K     + + D P ++ + EES + +E G  +E+K   V++K++ L
Sbjct: 412 KVTAESESESDEPEDSENEEESNEKAERGSQSEEKRMMVEKKAIEL 457


>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 438

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 302 MKPQXDSPAENGDAEESXDASENGDATEKKETGVKRKSVA 421
           +K Q D+  E+ D ++  D  E    TEKK    K+KSVA
Sbjct: 293 IKKQTDTKTESSDDDD--DEKEENSKTEKKTVADKKKSVA 330


>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 317 DSPAENGDAEESXDASENGDATEKKETG 400
           D P E+GD EE  D  E+    E+ E G
Sbjct: 64  DRPTEDGDEEEEEDEDEDDGGDEEDEEG 91


>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
           phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
           contains Pfam profiles PF02453: Reticulon, PF00533:
           BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
           factor
          Length = 1011

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 278 VMAKXMVPMKPQXDSPAENGDAE--ESXDASENGDATEKKETGVKRKSV 418
           V  + +V  K   +   +NGD E  +  D  E+GD  E++E  V++KSV
Sbjct: 210 VCQEMIVSAKSNENEQIDNGDQEIGDQDDYEEDGDEEEERE--VEKKSV 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,522
Number of Sequences: 28952
Number of extensions: 166020
Number of successful extensions: 338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)